From 937794295977a2d67cea245ed7389d34c3f41511 Mon Sep 17 00:00:00 2001 From: James Fellows Yates Date: Thu, 10 Mar 2022 09:22:15 +0100 Subject: [PATCH] Remove deprecated parameters from test profiles --- CHANGELOG.md | 2 ++ conf/test_full.config | 1 - conf/test_stresstest_human.config | 1 - 3 files changed, 2 insertions(+), 2 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index a0b308b4c..dde3616c6 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -9,6 +9,8 @@ and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0. ### `Fixed` +- [#836](https://github.com/nf-core/eager/issues/836) Remove deprecated parameters from test profiles + ### `Dependencies` ### `Deprecated` diff --git a/conf/test_full.config b/conf/test_full.config index da2827e77..1c3c5c0f9 100644 --- a/conf/test_full.config +++ b/conf/test_full.config @@ -21,7 +21,6 @@ params { bwaalnl = 1024 run_bam_filtering = true - bam_discard_unmapped = true bam_unmapped_type = 'discard' bam_mapping_quality_threshold = 25 diff --git a/conf/test_stresstest_human.config b/conf/test_stresstest_human.config index f61d1b64e..3d3ed08a9 100644 --- a/conf/test_stresstest_human.config +++ b/conf/test_stresstest_human.config @@ -24,7 +24,6 @@ params { mtnucratio_header = 'ChrM' run_bam_filtering = true - bam_discard_unmapped = true bam_unmapped_type = 'discard' bam_mapping_quality_threshold = 30