From 8a9bbe196589d05b09610eb89006848e75619985 Mon Sep 17 00:00:00 2001 From: Lehmann_Fabian Date: Mon, 25 Apr 2022 16:31:33 +0200 Subject: [PATCH 1/4] define DSL1 explicitly, as Nextflow made DSL2 default Signed-off-by: Lehmann_Fabian --- main.nf | 1 + 1 file changed, 1 insertion(+) diff --git a/main.nf b/main.nf index f5d38fe45..ae21a644e 100644 --- a/main.nf +++ b/main.nf @@ -10,6 +10,7 @@ For a list of authors and contributors, see: https://github.com/nf-core/eager/tree/dev#authors-alphabetical ------------------------------------------------------------------------------------------------------------ */ +nextflow.enable.dsl=1 log.info Headers.nf_core(workflow, params.monochrome_logs) From 0411e5185f46fadb2b3c6ba898a04c441fa708f3 Mon Sep 17 00:00:00 2001 From: Lehmann_Fabian Date: Tue, 26 Apr 2022 09:48:14 +0200 Subject: [PATCH 2/4] Added information to Changelog.md Signed-off-by: Lehmann_Fabian --- CHANGELOG.md | 1 + 1 file changed, 1 insertion(+) diff --git a/CHANGELOG.md b/CHANGELOG.md index d31df3f8b..a2fe9c887 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -10,6 +10,7 @@ and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0. ### `Fixed` - Fixed some auxiliary files (adapater list, snpcapture/pileupcaller/sexdeterrmine BED files, and pileupCaller SNP file, PMD reference mask) in some cases only be used against one sample (❤ to @meganemichel for reporting, fix by @jfy133) +- [#882](https://github.com/nf-core/eager/pull/882) Define DSL1 explicitly, as Nextflow made DSL2 default ### `Dependencies` From 430a02918a43861a3a33f7841d4528021334caa9 Mon Sep 17 00:00:00 2001 From: "James A. Fellows Yates" Date: Tue, 26 Apr 2022 09:55:56 +0200 Subject: [PATCH 3/4] Update CHANGELOG.md --- CHANGELOG.md | 12 ++++++++++++ 1 file changed, 12 insertions(+) diff --git a/CHANGELOG.md b/CHANGELOG.md index a2fe9c887..02b806de5 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -3,6 +3,18 @@ The format is based on [Keep a Changelog](http://keepachangelog.com/en/1.0.0/) and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0.html). +## [dev] + +### `Added` + +### `Fixed` + +- [#882](https://github.com/nf-core/eager/pull/882) Define DSL1 execution explicitly, as new versions Nextflow made DSL2 default (♥ to & fix from @Lehmann-Fabian) + +### `Dependencies` + +### `Deprecated` + ## [2.4.4] - 2022-04-08 ### `Added` From 3ad88ec2af5ae3f45056257bba2d49341e15a9b9 Mon Sep 17 00:00:00 2001 From: "James A. Fellows Yates" Date: Tue, 26 Apr 2022 09:56:22 +0200 Subject: [PATCH 4/4] Update CHANGELOG.md --- CHANGELOG.md | 1 - 1 file changed, 1 deletion(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 02b806de5..c71a07822 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -22,7 +22,6 @@ and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0. ### `Fixed` - Fixed some auxiliary files (adapater list, snpcapture/pileupcaller/sexdeterrmine BED files, and pileupCaller SNP file, PMD reference mask) in some cases only be used against one sample (❤ to @meganemichel for reporting, fix by @jfy133) -- [#882](https://github.com/nf-core/eager/pull/882) Define DSL1 explicitly, as Nextflow made DSL2 default ### `Dependencies`