From 97c830abab57c69ee9d37fba20f6219b101c58d6 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Aida=20Andrades=20Valtue=C3=B1a?= Date: Thu, 25 Aug 2022 13:57:43 +0200 Subject: [PATCH 1/2] Update usage.md --- docs/usage.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/usage.md b/docs/usage.md index 133f986fc..67d987022 100644 --- a/docs/usage.md +++ b/docs/usage.md @@ -306,7 +306,7 @@ This TSV should look like the following: | Sample_Name | Library_ID | Lane | Colour_Chemistry | SeqType | Organism | Strandedness | UDG_Treatment | R1 | R2 | BAM | |-------------|------------|------|------------------|--------|----------|--------------|---------------|----|----|-----| | JK2782 | JK2782 | 1 | 4 | PE | Mammoth | double | full | [https://github.com/nf-core/test-datasets/raw/eager/testdata/Mammoth/fastq/JK2782_TGGCCGATCAACGA_L008_R1_001.fastq.gz.tengrand.fq.gz](https://github.com/nf-core/test-datasets/raw/eager/testdata/Mammoth/fastq/JK2782_TGGCCGATCAACGA_L008_R1_001.fastq.gz.tengrand.fq.gz) | [https://github.com/nf-core/test-datasets/raw/eager/testdata/Mammoth/fastq/JK2782_TGGCCGATCAACGA_L008_R2_001.fastq.gz.tengrand.fq.gz](https://github.com/nf-core/test-datasets/raw/eager/testdata/Mammoth/fastq/JK2782_TGGCCGATCAACGA_L008_R2_001.fastq.gz.tengrand.fq.gz) | NA | -| JK2802 | JK2802 | 2 | 2 | SE | Mammoth | double | full | [https://github.com/nf-core/test-datasets/raw/eager/testdata/Mammoth/fastq/JK2802_AGAATAACCTACCA_L008_R1_001.fastq.gz.tengrand.fq.gz](https://github.com/nf-core/test-datasets/raw/eager/testdata/Mammoth/fastq/JK2802_AGAATAACCTACCA_L008_R1_001.fastq.gz.tengrand.fq.gz) | [https://github.com/nf-core/test-datasets/raw/eager/testdata/Mammoth/fastq/JK2802_AGAATAACCTACCA_L008_R2_001.fastq.gz.tengrand.fq.gz](https://github.com/nf-core/test-datasets/raw/eager/testdata/Mammoth/fastq/JK2802_AGAATAACCTACCA_L008_R2_001.fastq.gz.tengrand.fq.gz) | NA | +| JK2802 | JK2802 | 2 | 2 | SE | Mammoth | double | full | [https://github.com/nf-core/test-datasets/raw/eager/testdata/Mammoth/fastq/JK2802_AGAATAACCTACCA_L008_R1_001.fastq.gz.tengrand.fq.gz](https://github.com/nf-core/test-datasets/raw/eager/testdata/Mammoth/fastq/JK2802_AGAATAACCTACCA_L008_R1_001.fastq.gz.tengrand.fq.gz) | NA | NA | A template can be taken from [here](https://raw.githubusercontent.com/nf-core/test-datasets/eager/reference/TSV_template.tsv). From 8b42000bad0dd4c7c5f68026a03e375f2dddfecf Mon Sep 17 00:00:00 2001 From: "James A. Fellows Yates" Date: Thu, 25 Aug 2022 15:17:02 +0200 Subject: [PATCH 2/2] Update CHANGELOG.md --- CHANGELOG.md | 1 + 1 file changed, 1 insertion(+) diff --git a/CHANGELOG.md b/CHANGELOG.md index 945b78ac5..e5cc41bc8 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -10,6 +10,7 @@ and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0. ### `Fixed` - Changed endors.py license from GPL to MIT (by @aidaanva) +- Removed erroneous R2 in single-end example in input TSV of usage docs (by @aidaanva) ### `Dependencies`