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Releases: nf-core/funcscan

1.0.1 - German Rollmops (Patch) - 2023-02-27

27 Feb 12:01
@jasmezz jasmezz
1.0.1
98a0815
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1.0.1 - German Rollmops (Patch) - 2023-02-27

v1.0.1 - [2023-02-27]

Added

  • #229 Added pipeline DOI to WorkflowMain.groovy to display citation info when executing the pipeline. (by @jasmezz)

Fixed

  • #227 Removed a header check in the check_samplesheet.py script that was producing false negatives. Presence of required columns is still validated. (by @Midnighter)
  • #228 Improved database downloading guidance to emphasise it is recommended to let nf-core/funcscan do the downloading on a first run, rather than manually downloading yourself. (reported by @alexhbnr, fixed by @jfy133)

Dependencies

Deprecated

Contributors

Midnighter, alexhbnr, and 2 other contributors
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1.0.0 - German Rollmops - 2023-02-15

15 Feb 11:41
@jasmezz jasmezz
1.0.0
d6773ca
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1.0.0 - German Rollmops - 2023-02-15

v1.0.0 - German Rollmops - [2023-02-15]

Initial release of nf-core/funcscan, created with the nf-core template.

Added

  • Added annotation tools (Prokka, Prodigal, Bakta).
  • Added AMP screening workflow (tools: Macrel, AMPlify, ampir, hmmsearch).
  • Added ARG screening workflow (tools: ABRicate, AMRFinderPlus, DeepARG, fARGene).
  • Added BGC screening workflow (tools: antiSMASH, DeepBGC, GECCO, hmmsearch).
  • Added workflow summary tools (tools: hAMRonization, AMPcombi, comBGC).

Fixed

Dependencies

Deprecated

Photo by Ra Boe under CC BY-SA 2.5

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