diff --git a/modules/nf-core/bamstats/generalstats/main.nf b/modules/nf-core/bamstats/generalstats/main.nf
index 4bae58d6ba1f..2459aeb200e0 100644
--- a/modules/nf-core/bamstats/generalstats/main.nf
+++ b/modules/nf-core/bamstats/generalstats/main.nf
@@ -48,4 +48,3 @@ process BAMSTATS_GENERALSTATS {
     END_VERSIONS
     """
 }
-
diff --git a/modules/nf-core/cat/cat/main.nf b/modules/nf-core/cat/cat/main.nf
index adbdbd7ba627..2862c64cd9d0 100644
--- a/modules/nf-core/cat/cat/main.nf
+++ b/modules/nf-core/cat/cat/main.nf
@@ -76,4 +76,3 @@ def getFileSuffix(filename) {
     def match = filename =~ /^.*?((\.\w{1,5})?(\.\w{1,5}\.gz$))/
     return match ? match[0][1] : filename.substring(filename.lastIndexOf('.'))
 }
-
diff --git a/modules/nf-core/ensemblvep/filtervep/main.nf b/modules/nf-core/ensemblvep/filtervep/main.nf
index 7eec3cb74a03..cef3c7f4b2dc 100644
--- a/modules/nf-core/ensemblvep/filtervep/main.nf
+++ b/modules/nf-core/ensemblvep/filtervep/main.nf
@@ -47,4 +47,3 @@ process ENSEMBLVEP_FILTERVEP {
     END_VERSIONS
     """
 }
-
diff --git a/modules/nf-core/famsa/guidetree/main.nf b/modules/nf-core/famsa/guidetree/main.nf
index 7d8f46cdeaf7..498112e8fe40 100644
--- a/modules/nf-core/famsa/guidetree/main.nf
+++ b/modules/nf-core/famsa/guidetree/main.nf
@@ -46,4 +46,3 @@ process FAMSA_GUIDETREE {
     END_VERSIONS
     """
 }
-
diff --git a/modules/nf-core/faqcs/main.nf b/modules/nf-core/faqcs/main.nf
index 3e79124c55d4..7560a55e4cb4 100644
--- a/modules/nf-core/faqcs/main.nf
+++ b/modules/nf-core/faqcs/main.nf
@@ -132,4 +132,3 @@ process FAQCS {
         END_VERSIONS
     """
 }
-
diff --git a/modules/nf-core/fgbio/sortbam/main.nf b/modules/nf-core/fgbio/sortbam/main.nf
index 3c779d0ca9e7..fa9d602bc5be 100644
--- a/modules/nf-core/fgbio/sortbam/main.nf
+++ b/modules/nf-core/fgbio/sortbam/main.nf
@@ -33,4 +33,3 @@ process FGBIO_SORTBAM {
     END_VERSIONS
     """
 }
-
diff --git a/modules/nf-core/fqtk/main.nf b/modules/nf-core/fqtk/main.nf
index 5bd11e1224e5..30e1b22afd56 100644
--- a/modules/nf-core/fqtk/main.nf
+++ b/modules/nf-core/fqtk/main.nf
@@ -45,4 +45,3 @@ process FQTK {
         fqtk: \$(echo \$(fqtk --version 2>&1) | cut -d " " -f2)
     """
 }
-
diff --git a/modules/nf-core/icountmini/sigxls/main.nf b/modules/nf-core/icountmini/sigxls/main.nf
index 083ce60fbf88..e5bde11cae7b 100644
--- a/modules/nf-core/icountmini/sigxls/main.nf
+++ b/modules/nf-core/icountmini/sigxls/main.nf
@@ -47,4 +47,3 @@ process ICOUNTMINI_SIGXLS {
     END_VERSIONS
     """
 }
-
diff --git a/modules/nf-core/kaiju/kaiju2krona/main.nf b/modules/nf-core/kaiju/kaiju2krona/main.nf
index 85d2dfd2a7bc..d75a23d934f4 100644
--- a/modules/nf-core/kaiju/kaiju2krona/main.nf
+++ b/modules/nf-core/kaiju/kaiju2krona/main.nf
@@ -49,4 +49,3 @@ process KAIJU_KAIJU2KRONA {
     END_VERSIONS
     """
 }
-
diff --git a/modules/nf-core/leviosam2/lift/main.nf b/modules/nf-core/leviosam2/lift/main.nf
index 1af66e7414ad..fb0ca07ab41c 100644
--- a/modules/nf-core/leviosam2/lift/main.nf
+++ b/modules/nf-core/leviosam2/lift/main.nf
@@ -49,4 +49,3 @@ process LEVIOSAM2_LIFT {
     END_VERSIONS
     """
 }
-
diff --git a/modules/nf-core/metaphlan/makedb/main.nf b/modules/nf-core/metaphlan/makedb/main.nf
index 99bd0d8d3820..bc41c28f3660 100644
--- a/modules/nf-core/metaphlan/makedb/main.nf
+++ b/modules/nf-core/metaphlan/makedb/main.nf
@@ -49,5 +49,3 @@ process METAPHLAN_MAKEDB {
     END_VERSIONS
     """
 }
-
-
diff --git a/modules/nf-core/plink/ld/main.nf b/modules/nf-core/plink/ld/main.nf
index b6315689d791..864fe78f80e2 100644
--- a/modules/nf-core/plink/ld/main.nf
+++ b/modules/nf-core/plink/ld/main.nf
@@ -94,4 +94,3 @@ process PLINK_LD {
     END_VERSIONS
     """
 }
-
diff --git a/modules/nf-core/sniffles/main.nf b/modules/nf-core/sniffles/main.nf
index 3722b74e1a5d..0841ef465f6f 100644
--- a/modules/nf-core/sniffles/main.nf
+++ b/modules/nf-core/sniffles/main.nf
@@ -37,4 +37,3 @@ process SNIFFLES {
     END_VERSIONS
     """
 }
-
diff --git a/modules/nf-core/tcoffee/seqreformat/main.nf b/modules/nf-core/tcoffee/seqreformat/main.nf
index 774ae2be4740..c4c31f835f87 100644
--- a/modules/nf-core/tcoffee/seqreformat/main.nf
+++ b/modules/nf-core/tcoffee/seqreformat/main.nf
@@ -46,5 +46,3 @@ process TCOFFEE_SEQREFORMAT {
     END_VERSIONS
     """
 }
-
-
diff --git a/subworkflows/nf-core/bam_cnv_wisecondorx/main.nf b/subworkflows/nf-core/bam_cnv_wisecondorx/main.nf
index fc332e84f3cc..21ca09245f65 100644
--- a/subworkflows/nf-core/bam_cnv_wisecondorx/main.nf
+++ b/subworkflows/nf-core/bam_cnv_wisecondorx/main.nf
@@ -38,4 +38,3 @@ workflow BAM_CNV_WISECONDORX {
 
     versions        = ch_versions                               // channel: path(versions.yml)
 }
-
diff --git a/subworkflows/nf-core/bam_docounts_contamination_angsd/main.nf b/subworkflows/nf-core/bam_docounts_contamination_angsd/main.nf
index 97620c3e07f3..ec3f3a20ddb9 100644
--- a/subworkflows/nf-core/bam_docounts_contamination_angsd/main.nf
+++ b/subworkflows/nf-core/bam_docounts_contamination_angsd/main.nf
@@ -33,4 +33,3 @@ workflow BAM_DOCOUNTS_CONTAMINATION_ANGSD {
     txt      = ANGSD_CONTAMINATION.out.txt // channel: [ val(meta), [ txt ] ]
     versions = ch_versions                 // channel: [ path(versions.yml) ]
 }
-
diff --git a/subworkflows/nf-core/bam_ngscheckmate/main.nf b/subworkflows/nf-core/bam_ngscheckmate/main.nf
index 4dd106f32778..629dbf25cdd7 100644
--- a/subworkflows/nf-core/bam_ngscheckmate/main.nf
+++ b/subworkflows/nf-core/bam_ngscheckmate/main.nf
@@ -46,4 +46,3 @@ workflow BAM_NGSCHECKMATE {
     versions     = ch_versions                       // channel: [ versions.yml ]
 
 }
-
diff --git a/subworkflows/nf-core/bam_split_by_region/main.nf b/subworkflows/nf-core/bam_split_by_region/main.nf
index 0ec700b14e85..82b00f3ce4cd 100644
--- a/subworkflows/nf-core/bam_split_by_region/main.nf
+++ b/subworkflows/nf-core/bam_split_by_region/main.nf
@@ -65,4 +65,3 @@ workflow BAM_SPLIT_BY_REGION {
     bam_bai     = ch_output                         // channel: [ val(meta), path(bam), path(bai) ]
     versions    = ch_versions                       // channel: [ path(versions.yml) ]
 }
-
diff --git a/subworkflows/nf-core/bam_variant_calling_sort_freebayes_bcftools/main.nf b/subworkflows/nf-core/bam_variant_calling_sort_freebayes_bcftools/main.nf
index cbc0b727f5de..8dc81f409f59 100644
--- a/subworkflows/nf-core/bam_variant_calling_sort_freebayes_bcftools/main.nf
+++ b/subworkflows/nf-core/bam_variant_calling_sort_freebayes_bcftools/main.nf
@@ -34,4 +34,3 @@ workflow BAM_VARIANT_CALLING_SORT_FREEBAYES_BCFTOOLS {
 
     versions = ch_versions                     // channel: [ path(versions.yml) ]
 }
-
diff --git a/subworkflows/nf-core/bam_variant_demix_boot_freyja/main.nf b/subworkflows/nf-core/bam_variant_demix_boot_freyja/main.nf
index ad1fdc0826f0..4f9f06743495 100644
--- a/subworkflows/nf-core/bam_variant_demix_boot_freyja/main.nf
+++ b/subworkflows/nf-core/bam_variant_demix_boot_freyja/main.nf
@@ -78,4 +78,3 @@ workflow BAM_VARIANT_DEMIX_BOOT_FREYJA {
     lineages_meta  = ch_lineages_meta              // channel: [ path(lineages_meta) ]
     versions       = ch_versions                   // channel: [ path(versions.yml) ]
     }
-
diff --git a/subworkflows/nf-core/bed_scatter_bedtools/main.nf b/subworkflows/nf-core/bed_scatter_bedtools/main.nf
index e24e7280a87b..9f461fbb4bff 100644
--- a/subworkflows/nf-core/bed_scatter_bedtools/main.nf
+++ b/subworkflows/nf-core/bed_scatter_bedtools/main.nf
@@ -29,4 +29,3 @@ workflow BED_SCATTER_BEDTOOLS {
 
     versions        = ch_versions       // channel: [ path(versions.yml) ]
 }
-
diff --git a/subworkflows/nf-core/fasta_binning_concoct/main.nf b/subworkflows/nf-core/fasta_binning_concoct/main.nf
index cdcf8826dce4..ee51044cf120 100644
--- a/subworkflows/nf-core/fasta_binning_concoct/main.nf
+++ b/subworkflows/nf-core/fasta_binning_concoct/main.nf
@@ -53,4 +53,3 @@ workflow FASTA_BINNING_CONCOCT {
 
     versions = ch_versions                                         // channel: [ versions.yml ]
 }
-
diff --git a/subworkflows/nf-core/fasta_build_add_kraken2/main.nf b/subworkflows/nf-core/fasta_build_add_kraken2/main.nf
index 41f0f205a0e3..1868f51a749d 100644
--- a/subworkflows/nf-core/fasta_build_add_kraken2/main.nf
+++ b/subworkflows/nf-core/fasta_build_add_kraken2/main.nf
@@ -24,4 +24,3 @@ workflow FASTA_BUILD_ADD_KRAKEN2 {
     db = KRAKEN2_BUILD.out.db // channel: [ val(meta), [ db ] ]
     versions = ch_versions    // channel: [ versions.yml ]
 }
-
diff --git a/subworkflows/nf-core/fasta_build_add_kraken2_bracken/main.nf b/subworkflows/nf-core/fasta_build_add_kraken2_bracken/main.nf
index cb9e3705d0b2..cab2f6b4dcfe 100644
--- a/subworkflows/nf-core/fasta_build_add_kraken2_bracken/main.nf
+++ b/subworkflows/nf-core/fasta_build_add_kraken2_bracken/main.nf
@@ -39,4 +39,3 @@ workflow FASTA_BUILD_ADD_KRAKEN2_BRACKEN {
     db = ch_final_db // channel: [ val(meta), [ db ] ]
     versions = ch_versions    // channel: [ versions.yml ]
 }
-
diff --git a/subworkflows/nf-core/fasta_clean_fcs/main.nf b/subworkflows/nf-core/fasta_clean_fcs/main.nf
index 3b4eba4eda9f..cc3a65caeae7 100644
--- a/subworkflows/nf-core/fasta_clean_fcs/main.nf
+++ b/subworkflows/nf-core/fasta_clean_fcs/main.nf
@@ -26,4 +26,3 @@ workflow FASTA_CLEAN_FCS {
     fcsgx_taxonomy_report       = FCS_FCSGX.out.taxonomy_report             // channel: [ val(meta), [ taxonomy_report ] ]
     versions                    = ch_versions                               // channel: [ versions.yml ]
 }
-
diff --git a/subworkflows/nf-core/fastq_align_bwaaln/main.nf b/subworkflows/nf-core/fastq_align_bwaaln/main.nf
index 647e83a312e9..ccf63d5cf955 100644
--- a/subworkflows/nf-core/fastq_align_bwaaln/main.nf
+++ b/subworkflows/nf-core/fastq_align_bwaaln/main.nf
@@ -109,4 +109,3 @@ workflow FASTQ_ALIGN_BWAALN {
 
     versions = ch_versions         // channel: [ path(versions.yml) ]
 }
-
diff --git a/subworkflows/nf-core/fastq_align_hisat2/main.nf b/subworkflows/nf-core/fastq_align_hisat2/main.nf
index a2ec1cf5ea61..511fe035ce27 100644
--- a/subworkflows/nf-core/fastq_align_hisat2/main.nf
+++ b/subworkflows/nf-core/fastq_align_hisat2/main.nf
@@ -41,4 +41,3 @@ workflow FASTQ_ALIGN_HISAT2 {
 
     versions = ch_versions                          // channel: [ versions.yml ]
 }
-
diff --git a/subworkflows/nf-core/fastq_create_umi_consensus_fgbio/main.nf b/subworkflows/nf-core/fastq_create_umi_consensus_fgbio/main.nf
index 2ff41583c682..661d79327d9b 100644
--- a/subworkflows/nf-core/fastq_create_umi_consensus_fgbio/main.nf
+++ b/subworkflows/nf-core/fastq_create_umi_consensus_fgbio/main.nf
@@ -203,4 +203,3 @@ workflow FASTQ_CREATE_UMI_CONSENSUS_FGBIO {
     mappedconsensusbam = SORTBAM.out.bam                // channel: [ val(meta), [ bam ] ]
     versions           = ch_versions                    // channel: [ versions.yml ]
 }
-
diff --git a/subworkflows/nf-core/fastq_extract_kraken_krakentools/main.nf b/subworkflows/nf-core/fastq_extract_kraken_krakentools/main.nf
index 0d70d04de481..1d02e56d9194 100644
--- a/subworkflows/nf-core/fastq_extract_kraken_krakentools/main.nf
+++ b/subworkflows/nf-core/fastq_extract_kraken_krakentools/main.nf
@@ -23,4 +23,3 @@ workflow FASTQ_EXTRACT_KRAKEN_KRAKENTOOLS {
     multiqc_files = KRAKEN2_KRAKEN2.out.report                                           // channel: [ val(meta), path ]
     versions = ch_versions                                                               // channel: [ versions.yml ]
 }
-
diff --git a/subworkflows/nf-core/fastq_ngscheckmate/main.nf b/subworkflows/nf-core/fastq_ngscheckmate/main.nf
index 4ddf784a38b1..0304f5b3ddfa 100644
--- a/subworkflows/nf-core/fastq_ngscheckmate/main.nf
+++ b/subworkflows/nf-core/fastq_ngscheckmate/main.nf
@@ -39,4 +39,3 @@ workflow FASTQ_NGSCHECKMATE {
     pdf          = NGSCHECKMATE_VAFNCM.out.pdf          // channel: [ meta, pdf ], optional
     versions     = ch_versions                          // channel: [ versions.yml ]
 }
-
diff --git a/subworkflows/nf-core/fastq_taxonomic_profile_metaphlan/main.nf b/subworkflows/nf-core/fastq_taxonomic_profile_metaphlan/main.nf
index c033dbae56f3..547bc1d286b4 100644
--- a/subworkflows/nf-core/fastq_taxonomic_profile_metaphlan/main.nf
+++ b/subworkflows/nf-core/fastq_taxonomic_profile_metaphlan/main.nf
@@ -26,4 +26,3 @@ workflow FASTQ_TAXONOMIC_PROFILE_METAPHLAN {
 
     versions = ch_versions
 }
-
diff --git a/subworkflows/nf-core/mmseqs_contig_taxonomy/main.nf b/subworkflows/nf-core/mmseqs_contig_taxonomy/main.nf
index 69dd8f230db2..325d8fecf098 100644
--- a/subworkflows/nf-core/mmseqs_contig_taxonomy/main.nf
+++ b/subworkflows/nf-core/mmseqs_contig_taxonomy/main.nf
@@ -53,4 +53,3 @@ workflow MMSEQS_CONTIG_TAXONOMY {
     db_contig   = ch_taxonomy_querydb       // channel: [ val(meta), db ]
     versions    = ch_versions               // channel: [ versions.yml ]
 }
-
diff --git a/subworkflows/nf-core/preprocess_rnaseq/main.nf b/subworkflows/nf-core/preprocess_rnaseq/main.nf
index 1b0f2da70423..c6252845f1e7 100644
--- a/subworkflows/nf-core/preprocess_rnaseq/main.nf
+++ b/subworkflows/nf-core/preprocess_rnaseq/main.nf
@@ -267,5 +267,3 @@ workflow PREPROCESS_RNASEQ {
     multiqc_files   = ch_multiqc_files.transpose().map{it[1]}
     versions        = ch_versions                     // channel: [ versions.yml ]
 }
-
-
diff --git a/subworkflows/nf-core/vcf_gather_bcftools/main.nf b/subworkflows/nf-core/vcf_gather_bcftools/main.nf
index 88f6de045fc8..18315a2b4ea9 100644
--- a/subworkflows/nf-core/vcf_gather_bcftools/main.nf
+++ b/subworkflows/nf-core/vcf_gather_bcftools/main.nf
@@ -42,4 +42,3 @@ workflow VCF_GATHER_BCFTOOLS {
 
     versions = ch_versions           // channel: [ versions.yml ]
 }
-
diff --git a/subworkflows/nf-core/vcf_phase_shapeit5/main.nf b/subworkflows/nf-core/vcf_phase_shapeit5/main.nf
index 966f9019055a..8483740dbc64 100644
--- a/subworkflows/nf-core/vcf_phase_shapeit5/main.nf
+++ b/subworkflows/nf-core/vcf_phase_shapeit5/main.nf
@@ -93,4 +93,3 @@ workflow VCF_PHASE_SHAPEIT5 {
     variants_index      = VCF_INDEX2.out.csi                     // channel: [ val(meta), csi ]
     versions            = ch_versions                            // channel: [ versions.yml ]
 }
-