GCP error in v.3.4.1 "Cloud Storage objects are immutable" #1491
Description
Description of the bug
Got the error:
Apr-24 16:07:17.072 [Actor Thread 40] ERROR nextflow.extension.OperatorImpl - @unknown
com.google.cloud.storage.contrib.nio.CloudStorageObjectImmutableException: Cloud Storage objects are immutable.
at com.google.cloud.storage.contrib.nio.CloudStorageFileAttributeView.setTimes(CloudStorageFileAttributeView.java:65)
at java.base/java.nio.file.CopyMoveHelper.copyToForeignTarget(CopyMoveHelper.java:135)
at java.base/java.nio.file.CopyMoveHelper.moveToForeignTarget(CopyMoveHelper.java:157)
at java.base/java.nio.file.Files.move(Files.java:1435)
at nextflow.file.SimpleFileCollector.saveFile(SimpleFileCollector.groovy:102)
at nextflow.file.FileCollector.saveTo0(FileCollector.groovy:228)
the pipeline has been launched with a very simple test command (I’ve hidden some parts of the identifiers).
conversation in Slack:
https://nfcore.slack.com/archives/C05V9FRJYMV/p1713976551898249
Command used and terminal output
nextflow run nf-core/sarek -c ../***_profile.config -profile gls,test --outdir .
profiles {
gls {
process.executor = 'google-batch'
workDir = 'gs://****-data/work'
google.location = 'europe-west4'
google.region = 'europe-west4'
google.project = '*****'
google.batch.usePrivateAddress = 'true'
google.batch.spot = true
fusion.enabled = true
wave.enabled = true
process.scratch = false
}
}
process {
errorStrategy = { task.exitStatus in [1,143,137,104,134,139,255,108] ? 'retry' : 'finish' }
maxRetries = 4
maxErrors = '-1'
}Relevant files
No response
System information
Google Cloud Batch
nf-core/sarek v3.4.1-gea88402
nextflow 23.10.1
same error when launched from GCP console CLI or when launched from a small VM with CentOS 7