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SIFT missense predictions for genomes

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#20 In nf-core/rnavar;

· m3hdad opened on Feb 1, 2022

Summary metrics of haplotypecaller.filtered.vcf

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#59 In nf-core/rnavar;

· ojziff opened on Jun 20, 2022

Optional filter out RNA editing variants

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#63 In nf-core/rnavar;

· ojziff opened on Jun 29, 2022

Single cell somatic mutations

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#77 In nf-core/rnavar;

· cutleraging opened on Nov 22, 2022

Add <code>trimming</code> step

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#96 In nf-core/rnavar;

· bounlu opened on Aug 15, 2023

Add samtools mpileup as an alternative variant caller

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#110 In nf-core/rnavar;

· Leon-Bichmann opened on Nov 28, 2023

Thoughts on submitting RNAVar to a journal?

questionFurther information is requestedFurther information is requested

Status: Open.

#147 In nf-core/rnavar;

· Shaun-Regenbaum opened on Jun 26, 2024

Add samtools markdup for UMI aware markdup

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#181 In nf-core/rnavar;

· matthdsm opened on Mar 3, 2025

Variant annotation VEP plugins

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#189 In nf-core/rnavar;

· leurwu opened on Mar 6, 2025