Failure on GATK4_BEDTOINTERVALLIST due to incorrect exome.bed generation from iGenomes References. #112
Description
Description of the bug
Then GATK4_BEDTOINTERVALLIST sometimes fails when using a variety of references genomes due to the incorrect creation of the genome.dict or exome.bed file from the reference GTF files. This results in a sequence dictionary mismatch between the two which leads the step to fail.
Command used and terminal output
No response
Relevant files
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System information
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