From a917003b921a82821c2add3918b27ee5181f8337 Mon Sep 17 00:00:00 2001 From: Anders Sune Pedersen Date: Sun, 23 Jul 2023 15:27:43 +0200 Subject: [PATCH 1/3] Updating tiddit to v3.6.1 --- modules.json | 4 ++-- modules/nf-core/tiddit/cov/main.nf | 6 +++--- modules/nf-core/tiddit/sv/main.nf | 6 +++--- 3 files changed, 8 insertions(+), 8 deletions(-) diff --git a/modules.json b/modules.json index da9ac319..ef81841f 100644 --- a/modules.json +++ b/modules.json @@ -367,12 +367,12 @@ }, "tiddit/cov": { "branch": "master", - "git_sha": "0460d316170f75f323111b4a2c0a2989f0c32013", + "git_sha": "1c90a501d102b800c27697f5ef39a6e217ab1915", "installed_by": ["modules"] }, "tiddit/sv": { "branch": "master", - "git_sha": "911696ea0b62df80e900ef244d7867d177971f73", + "git_sha": "1c90a501d102b800c27697f5ef39a6e217ab1915", "installed_by": ["modules"] }, "ucsc/wigtobigwig": { diff --git a/modules/nf-core/tiddit/cov/main.nf b/modules/nf-core/tiddit/cov/main.nf index 647f35a2..f4b1d675 100644 --- a/modules/nf-core/tiddit/cov/main.nf +++ b/modules/nf-core/tiddit/cov/main.nf @@ -2,10 +2,10 @@ process TIDDIT_COV { tag "$meta.id" label 'process_low' - conda "bioconda::tiddit=3.3.2" + conda "bioconda::tiddit=3.6.1" container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? - 'https://depot.galaxyproject.org/singularity/tiddit:3.3.2--py310hc2b7f4b_0' : - 'biocontainers/tiddit:3.3.2--py310hc2b7f4b_0' }" + 'https://depot.galaxyproject.org/singularity/tiddit:3.6.1--py38h24c8ff8_0' : + 'biocontainers/tiddit:3.6.1--py38h24c8ff8_0' }" input: tuple val(meta), path(input) diff --git a/modules/nf-core/tiddit/sv/main.nf b/modules/nf-core/tiddit/sv/main.nf index 1ebc8565..67a0670d 100644 --- a/modules/nf-core/tiddit/sv/main.nf +++ b/modules/nf-core/tiddit/sv/main.nf @@ -2,10 +2,10 @@ process TIDDIT_SV { tag "$meta.id" label 'process_medium' - conda "bioconda::tiddit=3.3.2" + conda "bioconda::tiddit=3.6.1" container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? - 'https://depot.galaxyproject.org/singularity/tiddit:3.3.2--py310hc2b7f4b_0' : - 'biocontainers/tiddit:3.3.2--py310hc2b7f4b_0' }" + 'https://depot.galaxyproject.org/singularity/tiddit:3.6.1--py38h24c8ff8_0' : + 'biocontainers/tiddit:3.6.1--py38h24c8ff8_0' }" input: tuple val(meta), path(input), path(input_index) From 492f69660842f429d00fc80577b716efea7b34bb Mon Sep 17 00:00:00 2001 From: Anders Sune Pedersen Date: Sun, 23 Jul 2023 15:48:24 +0200 Subject: [PATCH 2/3] Updating tiddit to v3.6.1 --- CHANGELOG.md | 4 ++++ 1 file changed, 4 insertions(+) diff --git a/CHANGELOG.md b/CHANGELOG.md index 9c92d787..2d216e05 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -16,6 +16,10 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 - UPD+Chromograph to identify and visualize UPD sites and regions in the chromosomes [#364](https://github.com/nf-core/raredisease/pull/364) and [#366](https://github.com/nf-core/raredisease/pull/366) - Added check for presence of case id for each sample in samplesheet [#357](https://github.com/nf-core/raredisease/pull/357) +### Changed + +- [#385](https://github.com/nf-core/sarek/pull/385) - Updating tiddit to v3.6.1 + ### Fixed - Avoiding publishing uncompressed VCF-file from `HMTNOTE_ANNOTATE`. (The corresponding compressed VCF-file still gets published.) [#368](https://github.com/nf-core/raredisease/pull/368) From 515c24b102bba19e2097dc11fddfe050952e5280 Mon Sep 17 00:00:00 2001 From: Anders Sune Pedersen Date: Mon, 24 Jul 2023 11:54:50 +0200 Subject: [PATCH 3/3] Adding section for v1.2.0dev in changelog --- CHANGELOG.md | 10 ++++++---- 1 file changed, 6 insertions(+), 4 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 2d216e05..51bc1ad6 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -3,6 +3,12 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/) and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html). +## v1.2.0dev + +### Changed + +- Tiddit updated to v3.6.1 [#385](https://github.com/nf-core/sarek/pull/385) + ## v1.1.0 - Abu [2023-07-21] ### `Added` @@ -16,10 +22,6 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 - UPD+Chromograph to identify and visualize UPD sites and regions in the chromosomes [#364](https://github.com/nf-core/raredisease/pull/364) and [#366](https://github.com/nf-core/raredisease/pull/366) - Added check for presence of case id for each sample in samplesheet [#357](https://github.com/nf-core/raredisease/pull/357) -### Changed - -- [#385](https://github.com/nf-core/sarek/pull/385) - Updating tiddit to v3.6.1 - ### Fixed - Avoiding publishing uncompressed VCF-file from `HMTNOTE_ANNOTATE`. (The corresponding compressed VCF-file still gets published.) [#368](https://github.com/nf-core/raredisease/pull/368)