diff --git a/docs/images/reportho_tube_map.svg b/docs/images/reportho_tube_map.svg index dc5d338..e105a61 100644 --- a/docs/images/reportho_tube_map.svg +++ b/docs/images/reportho_tube_map.svg @@ -1,4 +1,4 @@ -
Filter hits
nf-core/
reportho
Fasta
Sequence query
ID
Uniprot ID query
Identify sequence
OMA
Identify taxon
OMA
OMA
PANTHER
OrthoInspector
EggNOG
Online
Local
Online
Local
Online
Local
csv
csv
csv
csv
Single predictions
Query information
txt
Make score table
csvmerge
Python
Fetch ortholog predictions
 
csv
Score table
Python
Plot orthologs
ggplot
 
list
Filtered orthologs
Comparison plots
Fastq
Fastq
png
Fetch sequences
OMA/Uniprot
Fetch structures
AlphaFoldDB
3D-COFFEE
 
fasta
Ortholog sequences
T-COFFEE
 
aln
MSA
IQ-TREE
FastME
 
nwk
Tree
Python
Ortholog statistics
Calculate statistics
Dump parameters
cat
Generate reports
React
 
list
Version 1.0.0
Magnificent Mainsail
Core subworkflow
Optional downstream analysis
Optional report generation
Core data flow
Report data flow
 
html
Per-query reports
Choose one
Create alignment
Make phylogeny
Subworkflow
 
html
Summary report
Generate summary
MultiQC
+
Filter hits
Filter hits
nf-core/
nf-core/
reportho
reportho
Fasta
Fasta
Sequence query
Sequence q...
ID
ID
Uniprot ID query
Uniprot ID query
Identify sequence
Identify s...
OMA
OMA
Identify taxon
Identify t...
OMA
OMA
OMA
OMA
PANTHER
PANTHER
OrthoInspector
OrthoInspe...
EggNOG
EggNOG
Online
Online
Local
Local
Online
Online
Local
Local
Online
Online
Local
Local
csv
csv
csv
csv
csv
csv
csv
csv
Single predictions
Single predi...
Query information
Query inform...
txt
txt
Make score table
Make score ta...
csvmerge
Python
csvmerge...
Fetch ortholog predictions
Fetch ortholog predictions
 
csv
csv
Score table
Score table
Python
Python
Plot orthologs
Plot orthologs
ggplot
ggplot
 
list
list
Filtered orthologs
Filtered ort...
Comparison plots
Comparison pl...
Fastq
Fastq
Fastq
Fastq
png
png
Fetch sequences
Fetch sequenc...
OMA/Uniprot
OMA/Uniprot
Fetch structures
Fetch structu...
AlphaFoldDB
AlphaFoldDB
3D-COFFEE
3D-COFFEE
 
fasta
fasta
Ortholog sequences
Ortholog se...
T-COFFEE
T-COFFEE
 
aln
aln
MSA
MSA
IQ-TREE
IQ-TREE
FastME
FastME
 
nwk
nwk
Tree
Tree
Python
Python
Ortholog statistics
Ortholog sta...
Calculate statistics
Calculate sta...
Dump parameters
Dump paramete...
cat
cat
Generate reports
Generate repo...
React
React
 
list
list
Version 1.0.0
Magnificent Mainsail
Version 1.0.0...
Core subworkflow
Core subworkflow
Optional downstream analysis
Optional downstream analysis
Optional report generation
Optional report generation
Core data flow
Core data flow
Report data flow
Report data flow
 
html
html
Per-query reports
Per-query repor...
Choose one
Choose one
Create alignment
Create alignment
Make phylogeny
Make phylogeny
Subworkflow
Subworkflow
 
html
html
Summary report
Summary re...
Generate summary
Generate summ...
MultiQC
MultiQC