From c33b401fdaf5be054a787ef2628f95e53a8a0bbb Mon Sep 17 00:00:00 2001 From: Phil Ewels Date: Thu, 23 Jul 2020 15:05:53 +0200 Subject: [PATCH 1/2] Add Dockstore config file to template --- .../{{cookiecutter.name_noslash}}/.github/.dockstore.yml | 5 +++++ 1 file changed, 5 insertions(+) create mode 100644 nf_core/pipeline-template/{{cookiecutter.name_noslash}}/.github/.dockstore.yml diff --git a/nf_core/pipeline-template/{{cookiecutter.name_noslash}}/.github/.dockstore.yml b/nf_core/pipeline-template/{{cookiecutter.name_noslash}}/.github/.dockstore.yml new file mode 100644 index 0000000000..030138a0ca --- /dev/null +++ b/nf_core/pipeline-template/{{cookiecutter.name_noslash}}/.github/.dockstore.yml @@ -0,0 +1,5 @@ +# Dockstore config version, not pipeline version +version: 1.2 +workflows: + - subclass: nfl + primaryDescriptorPath: /nextflow.config From cbf86a5fa00daeb6b9651b4d567859354ac22e19 Mon Sep 17 00:00:00 2001 From: Phil Ewels Date: Thu, 23 Jul 2020 15:09:04 +0200 Subject: [PATCH 2/2] Changelog update --- CHANGELOG.md | 1 + 1 file changed, 1 insertion(+) diff --git a/CHANGELOG.md b/CHANGELOG.md index 14f67a2c81..1892a3980b 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -64,6 +64,7 @@ making a pull-request. See [`.github/CONTRIBUTING.md`](.github/CONTRIBUTING.md) * Fix `markdown_to_html.py` to work with Python 2 and 3. * Change `params.reads` -> `params.input` * Change `params.readPaths` -> `params.input_paths` +* Added a `.github/.dockstore.yml` config file for automatic workflow registration with [dockstore.org](https://dockstore.org/) ### Linting