From 4b4354aeaf4648ef4c4d094995919b5dc5ee1ccc Mon Sep 17 00:00:00 2001 From: phue Date: Fri, 31 Jul 2020 01:02:43 +0200 Subject: [PATCH 1/2] readPaths is now input_paths --- .../{{cookiecutter.name_noslash}}/conf/test_full.config | 2 +- .../{{cookiecutter.name_noslash}}/docs/usage.md | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/nf_core/pipeline-template/{{cookiecutter.name_noslash}}/conf/test_full.config b/nf_core/pipeline-template/{{cookiecutter.name_noslash}}/conf/test_full.config index 170c6bd4fc..d9abb981eb 100644 --- a/nf_core/pipeline-template/{{cookiecutter.name_noslash}}/conf/test_full.config +++ b/nf_core/pipeline-template/{{cookiecutter.name_noslash}}/conf/test_full.config @@ -15,7 +15,7 @@ params { // TODO nf-core: Specify the paths to your full test data ( on nf-core/test-datasets or directly in repositories, e.g. SRA) // TODO nf-core: Give any required params for the test so that command line flags are not needed single_end = false - readPaths = [ + input_paths = [ ['Testdata', ['https://github.com/nf-core/test-datasets/raw/exoseq/testdata/Testdata_R1.tiny.fastq.gz', 'https://github.com/nf-core/test-datasets/raw/exoseq/testdata/Testdata_R2.tiny.fastq.gz']], ['SRR389222', ['https://github.com/nf-core/test-datasets/raw/methylseq/testdata/SRR389222_sub1.fastq.gz', 'https://github.com/nf-core/test-datasets/raw/methylseq/testdata/SRR389222_sub2.fastq.gz']] ] diff --git a/nf_core/pipeline-template/{{cookiecutter.name_noslash}}/docs/usage.md b/nf_core/pipeline-template/{{cookiecutter.name_noslash}}/docs/usage.md index 3517a308c9..b0111a0afd 100644 --- a/nf_core/pipeline-template/{{cookiecutter.name_noslash}}/docs/usage.md +++ b/nf_core/pipeline-template/{{cookiecutter.name_noslash}}/docs/usage.md @@ -80,7 +80,7 @@ You can also supply a run name to resume a specific run: `-resume [run-name]`. U ### `-c` -Specify the path to a specific config file (this is a core NextFlow command). See the [nf-core website documentation](https://nf-co.re/usage/configuration) for more information. +Specify the path to a specific config file (this is a core Nextflow command). See the [nf-core website documentation](https://nf-co.re/usage/configuration) for more information. #### Custom resource requests From fce65876cdb40ce0102fc274b7b0b30171f99059 Mon Sep 17 00:00:00 2001 From: phue Date: Fri, 31 Jul 2020 01:08:35 +0200 Subject: [PATCH 2/2] update CHANGELOG.md --- CHANGELOG.md | 2 ++ 1 file changed, 2 insertions(+) diff --git a/CHANGELOG.md b/CHANGELOG.md index f4d8d69258..8f774449e9 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -1,5 +1,7 @@ # nf-core/tools: Changelog +* Change `params.readPaths` -> `params.input_paths` in `test_full.config` + ## [v1.10.1](https://github.com/nf-core/tools/releases/tag/1.10.1) - [2020-07-30] Patch release to fix the automatic template synchronisation, which failed in the v1.10 release.