From 3a2c8158b856712cb78b285b0bbe5c23125bf984 Mon Sep 17 00:00:00 2001 From: phue Date: Fri, 26 Mar 2021 11:15:34 +0100 Subject: [PATCH 1/2] fix conda and podman profile strictness --- nf_core/pipeline-template/nextflow.config | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/nf_core/pipeline-template/nextflow.config b/nf_core/pipeline-template/nextflow.config index 8f73409af0..9c503fafc6 100644 --- a/nf_core/pipeline-template/nextflow.config +++ b/nf_core/pipeline-template/nextflow.config @@ -65,7 +65,7 @@ profiles { singularity.enabled = false podman.enabled = false shifter.enabled = false - charliecloud = false + charliecloud.enabled = false process.conda = "$projectDir/environment.yml" } debug { process.beforeScript = 'echo $HOSTNAME' } @@ -94,7 +94,7 @@ profiles { docker.enabled = false podman.enabled = true shifter.enabled = false - charliecloud = false + charliecloud.enabled = false } shifter { singularity.enabled = false From bac6c74937d7ff5c56b62c7c95cb654e3adab9db Mon Sep 17 00:00:00 2001 From: phue Date: Fri, 26 Mar 2021 13:40:48 +0100 Subject: [PATCH 2/2] update CHANGELOG.md --- CHANGELOG.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 21bd6b5e55..f374652ac4 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -2,7 +2,7 @@ ## 1.14dev -_..nothing yet.._ +* Fixed an issue in the pipeline template regarding explicit disabling of unused container engines [[#972](https://github.com/nf-core/tools/pull/972)] ## [v1.13.3 - Copper Crocodile Resurrection :crocodile:](https://github.com/nf-core/tools/releases/tag/1.13.2) - [2021-03-24]