From ac1b9cd0b6d217c8dd51d1420ffa09f57d8bc02f Mon Sep 17 00:00:00 2001 From: "James A. Fellows Yates" Date: Tue, 11 Nov 2025 09:36:10 +0100 Subject: [PATCH 1/3] Change information on the create pipeline landing page --- nf_core/pipelines/create/pipelinetype.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/nf_core/pipelines/create/pipelinetype.py b/nf_core/pipelines/create/pipelinetype.py index 48914e8555..61367d0027 100644 --- a/nf_core/pipelines/create/pipelinetype.py +++ b/nf_core/pipelines/create/pipelinetype.py @@ -11,7 +11,7 @@ ## Choose _"nf-core"_ if: * You want your pipeline to be part of the nf-core community -* You think that there's an outside chance that it ever _could_ be part of nf-core +* Your pipeline has been accepted via the [nf-core proposal process](https://github.com/nf-core/proposals) """ markdown_type_custom = """ ## Choose _"Custom"_ if: From 18f4c019e251583244dc0e71d810d1aadfdb8966 Mon Sep 17 00:00:00 2001 From: nf-core-bot Date: Tue, 11 Nov 2025 08:41:26 +0000 Subject: [PATCH 2/3] [automated] Update CHANGELOG.md --- CHANGELOG.md | 1 + 1 file changed, 1 insertion(+) diff --git a/CHANGELOG.md b/CHANGELOG.md index 6aa0b23aa0..1fedbd7424 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -26,6 +26,7 @@ - Change GitHub Codespaces badge style ([#3869](https://github.com/nf-core/tools/pull/3869) and [#3873](https://github.com/nf-core/tools/pull/3873)) - Update multiqc to 1.32 ([#3878](https://github.com/nf-core/tools/pull/3878)) +- Update pipeline creation information page to be more exclusive as to what should use the full nf-core pipeline template ([#3891](https://github.com/nf-core/tools/pull/3891)) ### Linting From c7c62a2e5b11c549729d69346465b3ed121935b4 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?J=C3=BAlia=20Mir=20Pedrol?= Date: Tue, 18 Nov 2025 13:32:54 +0100 Subject: [PATCH 3/3] update textual snapshot --- .../test_create_app/test_choose_type.svg | 32 +++++++++---------- 1 file changed, 16 insertions(+), 16 deletions(-) diff --git a/tests/pipelines/__snapshots__/test_create_app/test_choose_type.svg b/tests/pipelines/__snapshots__/test_create_app/test_choose_type.svg index 8d37851b31..7fa42f04cd 100644 --- a/tests/pipelines/__snapshots__/test_create_app/test_choose_type.svg +++ b/tests/pipelines/__snapshots__/test_create_app/test_choose_type.svg @@ -40,13 +40,13 @@ .terminal-r6 { fill: #0178d4;font-style: italic;;text-decoration: underline; } .terminal-r7 { fill: #57a5e2 } .terminal-r8 { fill: #e0e0e0;font-style: italic; } -.terminal-r9 { fill: #7ae998 } -.terminal-r10 { fill: #6db2ff } -.terminal-r11 { fill: #55c076;font-weight: bold } -.terminal-r12 { fill: #ddedf9;font-weight: bold } -.terminal-r13 { fill: #008139 } -.terminal-r14 { fill: #004295 } -.terminal-r15 { fill: #e0e0e0;text-decoration: underline; } +.terminal-r9 { fill: #e0e0e0;text-decoration: underline; } +.terminal-r10 { fill: #7ae998 } +.terminal-r11 { fill: #6db2ff } +.terminal-r12 { fill: #55c076;font-weight: bold } +.terminal-r13 { fill: #ddedf9;font-weight: bold } +.terminal-r14 { fill: #008139 } +.terminal-r15 { fill: #004295 } .terminal-r16 { fill: #ffa62b;font-weight: bold } .terminal-r17 { fill: #495259 } @@ -212,7 +212,7 @@ - + ⭘nf-core pipelines create — Create a new pipeline with the nf-core pipeline templa… @@ -225,12 +225,12 @@ • You want your pipeline to be part of the• Your pipeline will never be part of nf-core nf-core community• You want full control over all features that -• You think that there's an outside chanceare included from the template (including -that it ever could be part of nf-corethose that are mandatory for nf-core). +• Your pipeline has been accepted via theare included from the template (including +nf-core proposal processthose that are mandatory for nf-core). -▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔ - nf-core  Custom  -▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁ +▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔▔ + nf-core  Custom  +▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁ @@ -241,10 +241,10 @@ • GitHub Actions continuous-integration configuration files: ▪ Pipeline test runs: Small-scale (GitHub) and large-scale (AWS) -▪ Code formatting checks with Prettier -▪ Auto-fix linting functionality using @nf-core-bot +▪ Code formatting checks with Prettier +▪ Auto-fix linting functionality using @nf-core-bot ▪ Marking old issues as stale -• Inclusion of shared nf-core configuration profiles +• Inclusion of shared nf-core configuration profiles