From f9a8c4c7323ad0611383ac801cce96816b0f66ed Mon Sep 17 00:00:00 2001 From: mashehu Date: Wed, 19 Nov 2025 12:56:40 +0100 Subject: [PATCH 1/2] fix markdown in sync PR message --- nf_core/pipelines/sync.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/nf_core/pipelines/sync.py b/nf_core/pipelines/sync.py index 33fa4674ee..f361d1cbe8 100644 --- a/nf_core/pipelines/sync.py +++ b/nf_core/pipelines/sync.py @@ -421,7 +421,7 @@ def make_pull_request(self): "[https://nf-co.re/docs/contributing/sync/](https://nf-co.re/docs/contributing/sync/#merging-automated-prs).\n\n" "For more information about this release of [nf-core/tools](https://github.com/nf-core/tools), " "please see the `v{tag}` [release page](https://github.com/nf-core/tools/releases/tag/{tag})." - "> [!NOTE]\n" + "\n\n> [!NOTE]\n" "> Since nf-core/tools 3.5.0, older template update PRs will not be automatically closed, but will remain open in your pipeline repository." "Older template PRs will be automatically closed once a newer template PR has been merged." ).format(tag=nf_core.__version__) From 4293f1373286c7c1a4ff8302f7b24887e7352bb0 Mon Sep 17 00:00:00 2001 From: mashehu Date: Wed, 19 Nov 2025 13:02:52 +0100 Subject: [PATCH 2/2] update changelog --- CHANGELOG.md | 1 + 1 file changed, 1 insertion(+) diff --git a/CHANGELOG.md b/CHANGELOG.md index e30b290c47..d3ce6b1811 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -5,6 +5,7 @@ ### General - Fix `blog_post` parameter for `nf-core pipelines sync` command ([#3911](https://github.com/nf-core/tools/pull/3911)) +- Fix markdown in sync PR message ([#3913](https://github.com/nf-core/tools/pull/3913)) ## [v3.5.0 - Terne Topi](https://github.com/nf-core/tools/releases/tag/3.5.0) - [2025-11-19]