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Conditional include are not expected to work  #201

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Conditional include are not expected to work #201
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@pditommaso

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@pditommaso
pditommaso
opened on Jun 10, 2021

Don't think this pattern is a good idea, if it works it's a bug!

viralrecon/main.nf

Lines 55 to 72 in a85d596

if (params.public_data_ids) {
include { SRA_DOWNLOAD } from './workflows/sra_download'
SRA_DOWNLOAD ()
//
// WORKFLOW: Variant and de novo assembly analysis for Illumina data
//
} else if (params.platform == 'illumina') {
include { ILLUMINA } from './workflows/illumina'
ILLUMINA ()
//
// WORKFLOW: Variant analysis for Nanopore data
//
} else if (params.platform == 'nanopore') {
include { NANOPORE } from './workflows/nanopore'
NANOPORE ()
}

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