Effortless argument parser

A DSL for data-driven computational pipelines

Aggregate results from bioinformatics analyses across many samples into a single report.

Pysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix.

DNAnexus platform client libraries

Simple, thread-safe, counter based progress logging

Run all examples for any locally cloned rust crate

Conda recipes for the bioconda channel.

API client for crates.io, the Rust crate registry.

Test data to be used for automated testing with the nf-core pipelines

Test data for MultiQC. See https://github.com/ewels/MultiQC

Nextflow plugins index repository

Grayskull 💀 - Recipe generator for Conda

Repository containing scripts to generate optimized configurations for resource utilization for nf-core AWS Megatests.

Package for clustering sequences de novo and assignment to existing nomenclature

A conda-smithy repository for pymupdf.

A place to submit conda recipes before they become fully fledged conda-forge feedstocks

Migrate a project from Poetry/Pipenv/pip-tools/pip to uv package manager

Global alignment and alignment extension

Pipeline for Solid tumours

RTG Tools: Utilities for accurate VCF comparison and manipulation

a python bioinformatics framework

A conda-smithy repository for pyxattr.

A conda-smithy repository for defopt.

A conda-smithy repository for conda-forge-pinning.

FASTA and FASTQ parsing in Rust

The tool for managing conda-forge feedstocks.