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Commits on Apr 24, 2018

• travis devtools version trouble

  nicolaroberts

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  c78989b

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• removed examples with GenomicRanges and Biostrings

  nicolaroberts

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  feee4fd

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• fix broken examples on old mut_example_chain

  nicolaroberts

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  a9a3959

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• bump up version for new vignettes and minor bug fixes

  nicolaroberts

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  378d358

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• reworked mut sigs vignette, focus on priors

  nicolaroberts

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  c7d384f

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• plot into variable to suppress list output

  nicolaroberts

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  d0ef59c

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• included data, now with lung plus prior

  nicolaroberts

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  5296b80

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• for samples with sig exposure, disregard frozen prior nodes

  nicolaroberts

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  bf48ae3

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• update included data, mutation examples

  nicolaroberts

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  6154857

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• update general vignette - esp priors

  nicolaroberts

  committed
  e51f04b

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• modified example data

  nicolaroberts

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  9808ba9

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• fix if no comp 0; label priors down to 0.9

  nicolaroberts

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  4de8d2a

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• group label bar end fix

  nicolaroberts

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  175fda4

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Commits on Apr 23, 2018

• x not chains

  nicolaroberts

  committed
  7b2687f

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• fix params in hdp_extract_components docs after reorganisation

  nicolaroberts

  committed
  0b55219

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• collation order

  nicolaroberts

  committed
  767ff36

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• Consolidate extract components code across single and multi

  nicolaroberts

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  8dff58a

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• OS note

  nicolaroberts

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  ea7a3cf

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Commits on Apr 13, 2018

• blunt end group highlights

  nicolaroberts

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  fa20458

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Commits on Nov 30, 2017

• fix generics bug on min.sample for comp exposure

  nicolaroberts

  committed
  96bd292

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Commits on Nov 27, 2017

• minor update

  nicolaroberts

  committed
  74379d1

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• can specify minimum number of samples with signif component exposure

  nicolaroberts

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  eee1db2

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• can choose horizontal axis threshold in plot_data_assigned

  nicolaroberts

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  e9e09ed

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Commits on Oct 31, 2017

• drop FALSE bug fix

  nicolaroberts

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  2ca0498

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• new comp extract for prior info case

  nicolaroberts

  committed
  3b0bc1c

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Commits on Oct 24, 2017

• revert to 95% CI

  nicolaroberts

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  9a96ba5

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Commits on Oct 23, 2017

• rm slow object check in component plots

  nicolaroberts

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  846a2c0

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• bump version

  nicolaroberts

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  2284e2f

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• 90% cred int, instead of 95%

  nicolaroberts

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  8aa0632

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Commits on May 11, 2017

• update version number because of change to hdp_extract_components for multi chain objects

  nicolaroberts

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  f80b066

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• man pages with new roxygen version

  nicolaroberts

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  b6a02be

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• small vignette adjustment

  nicolaroberts

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  dad1d23

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• plot comp exposure - drop=false to keep matrices

  nicolaroberts

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  2af3af8

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• don't need redo param anymore

  nicolaroberts

  committed
  0f5cd8c

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• extract comp for multi chain now just merges raw posterior samples across all chains and does same thing as hdp_extract_comp_single

  nicolaroberts

  committed
  10021db

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