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Commits on Oct 6, 2015

• report zscores from before rather than after polishing

  nlhepler

  committed
  991acac

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• Fix the CircleCI for reals this time (was broken a while ago by seqan changes)

  nlhepler

  committed
  23397d5

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• update CircleCI configuration

  nlhepler

  committed
  304cc48

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• Merge branch 'master' of github.com:PacificBiosciences/pbccs

  nlhepler

  committed
  f34014a

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• Fix check target sentinel, tests using pbconsensus poa

  nlhepler

  committed
  612a0aa

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• Use pbconsensus instead of built-in ConsensusCore

  nlhepler

  committed
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Commits on Oct 2, 2015

• Import external SeqAn fork and delete local copy

  bnbowman

  committed
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Commits on Oct 1, 2015

• Patching SeqAn for known issues required by PBSparse

  bnbowman

  committed
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Commits on Sep 30, 2015

• Fix 0-1000 rq for subread input filtering

  nlhepler

  committed
  62f88c7

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• Merge branch 'master' of github.com:PacificBiosciences/pbccs

  nlhepler

  committed
  1892cb9

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• Update to latest pacbio bam spec

  nlhepler

  committed
  0fa25f5

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• Merge pull request #74 from natechols/tc-update

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  evolvedmicrobe

  committed
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• added minPredictedAccuracy to tool contract

  

  Nathaniel Echols

  committed
  bbecf08

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Commits on Sep 22, 2015

• Fix doc for minPredAcc, unused variable in cpp-optparse

  nlhepler

  committed
  47b3eb3

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• Fix a heap of warnings, fix add_subdirectory for pbbam, fix CMP0048

  nlhepler

  committed
  75b0408

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• Drop CMAKE down to 2.8, impl VERSION_* manually

  nlhepler

  committed
  b262c56

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• Support setting/using shared pbbam libraries (and predefined includes)

  nlhepler

  committed
  f556cbd

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• One last annoying warning message, gone

  nlhepler

  committed
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Commits on Sep 21, 2015

• Merge branch 'master' of github.com:PacificBiosciences/pbccs

  nlhepler

  committed
  d091c23

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• Fix annoying warnings

  nlhepler

  committed
  734e839

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• Merge pull request #71 from bnbowman/master

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  nlhepler

  committed
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Commits on Sep 20, 2015

• Update OptParse to merge upstream and Lance's fixes

  

  Brett Bowman

  authored and

  Brett Bowman

  committed
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• Merge branch 'master' of https://github.com/bnbowman/pbccs

  

  Brett Bowman

  authored and

  Brett Bowman

  committed
  cbfae8e

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Commits on Sep 19, 2015

• Updating cpp-optparse to fix option-group issues

  

  Brett Bowman

  committed
  ca51e8b

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Commits on Sep 16, 2015

• Update README.md

  evolvedmicrobe

  committed
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Commits on Sep 9, 2015

• Document --force option

  evolvedmicrobe

  committed
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Commits on Sep 4, 2015

• Merge pull request #68 from natechols/json-report

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  evolvedmicrobe

  committed
  5d8a3e0

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• convert CSV to JSON report

  

  Nathaniel Echols

  committed
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Commits on Sep 3, 2015

• Merge pull request #64 from natechols/pbcommand-update

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  nlhepler

  committed
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• Merge pull request #66 from nlhepler/master

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  nlhepler

  committed
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• Check before division, like a good numerical programmer

  nlhepler

  committed
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• Add std:: to try and fix gcc build errors..

  nlhepler

  committed
  7597341

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• Reject reads where either the zscore or the log-likelihood is not finite, should address an issue report by lhon

  nlhepler

  committed
  98fbbed

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• turn on verbose output

  

  Nathaniel Echols

  committed
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• sync with pbcommand change

  

  Nathaniel Echols

  committed
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