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Commits on Jan 27, 2025

• Add a Find/Concatenate module (#7356)

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  3 peopleauthored
  326bde8

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• bump multiqc 1.26 to 1.27 (#7364)

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  pinin4fjords

  authored
  f0719ae

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• Update actions/setup-node digest to 1d0ff46 (#7371)

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  renovate[bot]

  authored
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Commits on Jan 25, 2025

• Add CATPACK/READS (#7362)

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  jfy133

  and

  sateeshperi

  authored
  58d83da

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• Update bakta modules (#7367)

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  jasmezz

  and

  sateeshperi

  authored
  4f0998e

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• Run prettier on taxonkit/lineage/meta.yml (#7366)

  erikrikarddaniel

  authored
  90c5156

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Commits on Jan 24, 2025

• Upgrade simpleaf modules to 0.18.4 (#7335)

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  3 peopleauthored
  5b33c12

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• Add CATPACK_summarise (#7359)

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  jfy133

  authored
  271b0be

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• fix issue in tabix VEP PR (#7361)

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  nvnieuwk

  authored
  ef36bae

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• tabix vep output (#7360)

  nvnieuwk

  authored
  5a7ae28

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• Bump DAS_Tool container version (#7355)

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  prototaxites

  authored
  98482ba

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Commits on Jan 23, 2025

• FEAT: add meta to gatk4/baserecalibrator (#7354)

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  maxulysse

  authored
  0bcdd15

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• Bump TRGT to 1.5.0 (#7346)

  fellen31

  authored
  9b9d7d0

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• Bump Severus to 1.3 (#7345)

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  fellen31

  authored
  3d18fc5

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• update vcfanno output (#7353)

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  nvnieuwk

  authored
  b1137e2

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• Update odgi to version 0.9.0 (#7313)

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  heuermh

  and

  Simon Heumos

  authored
  759d9b3

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• Update: SEQKIT/REPLACE to optionally emit uncompressed output (#7352)

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  jfy133

  authored
  c898ced

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• Add CATPACK_ADDNAMES (#7349)

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  jfy133

  and

  maxulysse

  authored
  2c72cb8

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• Use the correct syntax for devcontainer features (#7344)

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  bepoli

  authored
  5b5e812

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• Add CATPACK_BINS (add missing optional input files CATPACK_CONTIGS) (#7347)

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  jfy133

  authored
  3486e0a

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Commits on Jan 22, 2025

• Update print format of BBMAP/repair.sh version (#7332)

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  8 peopleauthored
  4c81a35

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• Update to LAST version 1608 using sequera containers. (#7341)

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  charles-plessy

  authored
  b651d72

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Commits on Jan 21, 2025

• fix filter value for nf-test dry-run (#7340)

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  mashehu

  authored
  c0e2936

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• Add new module openms/filefilter (#7299)

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  jonasscheid

  authored
  26a34ec

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• Update GitHub Actions (#7339)

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  renovate[bot]

  authored
  a7de37f

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• Add CATPACK/CONTIGS (#7334)

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  jfy133

  and

  sateeshperi

  authored
  732e6be

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• Update all mmseqs modules to version 17 (#7337)

  jasmezz

  authored
  2dc4c04

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Commits on Jan 20, 2025

• update hifiasm module to support --ul with ONT reads (#7336)

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  nschan

  and

  mashehu

  authored
  ea86101

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• Allow transcriptome-only salmon indexing (#7327)

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  pinin4fjords

  authored
  25ddc0b

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• Dynamic sharding (#7284)

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  mashehu

  and

  maxulysse

  authored
  a04038f

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• Add CATPACK_PREPARE (#7312)

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  jfy133

  and

  sateeshperi

  authored
  9f266a9

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• port parabricks/deepvariant to nf-test (#6995)

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  3 peopleauthored
  a313e38

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Commits on Jan 18, 2025

• Bump wipertools to 1.1.4 (#7328)

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  8 peopleauthored
  e7f7c0f

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Commits on Jan 17, 2025

• Update seqkit to version 2.9.0 (#7315)

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  heuermh

  authored
  60645c2

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• Removed r-base from versions.yml (#7326)

  nschcolnicov

  authored
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