From a856b7356fe0f1ec37a80756ad0f827e95a24c7f Mon Sep 17 00:00:00 2001 From: Carlos Vivar Rios Date: Mon, 24 Jun 2024 11:05:49 +0200 Subject: [PATCH 1/7] fix(compose.prod.yml): removing app volume --- compose.prod.yml | 1 - 1 file changed, 1 deletion(-) diff --git a/compose.prod.yml b/compose.prod.yml index 2167f48e..37c1e9c5 100644 --- a/compose.prod.yml +++ b/compose.prod.yml @@ -11,7 +11,6 @@ services: volumes: - /var/run/docker.sock:/var/run/docker.sock - ${ODTP_PATH}:${ODTP_PATH} - - ${APP_PATH}:/app environment: ODTP_PATH: ${ODTP_PATH} ODTP_MONGO_SERVER: mongodb://${MONGO_DB_USER}:${MONGO_DB_PASSWORD}@mongodb-instance:27017/ From 31723da4772473e0824faa48125045eaadb55852 Mon Sep 17 00:00:00 2001 From: Carlos Vivar Rios Date: Mon, 24 Jun 2024 11:15:55 +0200 Subject: [PATCH 2/7] typo(JSON_EDITOR): Correcting typo in variables --- compose.dev.yml | 2 +- compose.prod.yml | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/compose.dev.yml b/compose.dev.yml index 4ea254bd..e3f49927 100644 --- a/compose.dev.yml +++ b/compose.dev.yml @@ -26,7 +26,7 @@ services: ODTP_MONGO_DB: ${ODTP_MONGO_DB} ODTP_DASHBOARD_PORT: ${ODTP_DASHBOARD_PORT} ODTP_DASHBOARD_RELOAD: ${ODTP_DASHBOARD_RELOAD} - ODTP_DASHBOARD_JSON_EDITIOR: ${ODTP_DASHBOARD_JSON_EDITIOR} + ODTP_DASHBOARD_JSON_EDITOR: ${ODTP_DASHBOARD_JSON_EDITOR} ODTP_LOG_LEVEL: ${ODTP_LOG_LEVEL} RUN_LOG_LEVEL: ${ODTP_LOG_LEVEL} diff --git a/compose.prod.yml b/compose.prod.yml index 37c1e9c5..252053f5 100644 --- a/compose.prod.yml +++ b/compose.prod.yml @@ -21,7 +21,7 @@ services: GITHUB_TOKEN: ${GITHUB_TOKEN} ODTP_MONGO_DB: ${ODTP_MONGO_DB} ODTP_DASHBOARD_PORT: ${ODTP_DASHBOARD_PORT} - ODTP_DASHBOARD_JSON_EDITIOR: ${ODTP_DASHBOARD_JSON_EDITIOR} + ODTP_DASHBOARD_JSON_EDITOR: ${ODTP_DASHBOARD_JSON_EDITOR} ODTP_LOG_LEVEL: ${ODTP_LOG_LEVEL} RUN_LOG_LEVEL: ${ODTP_LOG_LEVEL} From 8563ce14e3d9f577a25ef984a9b7ce6fdc8ab7b7 Mon Sep 17 00:00:00 2001 From: Carlos Vivar Rios Date: Mon, 24 Jun 2024 11:17:28 +0200 Subject: [PATCH 3/7] chore(compose.yml): Proposing compose.yml to avoid change in documentation with -f. --- compose.prod.yml => compose.yml | 0 1 file changed, 0 insertions(+), 0 deletions(-) rename compose.prod.yml => compose.yml (100%) diff --git a/compose.prod.yml b/compose.yml similarity index 100% rename from compose.prod.yml rename to compose.yml From 7fea984f1ed4f50a9ab83f900d706372837cac48 Mon Sep 17 00:00:00 2001 From: Carlos Vivar Rios Date: Mon, 24 Jun 2024 15:23:47 +0200 Subject: [PATCH 4/7] fix(Missing method): Missing get_component_version --- odtp/mongodb/db.py | 10 ++++++++++ 1 file changed, 10 insertions(+) diff --git a/odtp/mongodb/db.py b/odtp/mongodb/db.py index b21bc090..bf933adf 100644 --- a/odtp/mongodb/db.py +++ b/odtp/mongodb/db.py @@ -152,6 +152,16 @@ def get_document_id_by_field_value(field_path, field_value, collection): return str(document["_id"]) else: return None + +def get_component_version(component_name, version_tag): + with MongoClient(ODTP_MONGO_SERVER) as client: + db = client[ODTP_MONGO_DB] + cursor = db[collection_versions].find({ + "component.componentName": component_name, + "component_version": version_tag + }) + version_documents = mongodb_utils.get_list_from_cursor(cursor) + return version_documents def add_user(name, github, email): From 6e6cbbeef9aca9e763008c5177c96dfc65b5b107 Mon Sep 17 00:00:00 2001 From: Carlos Vivar Rios <45425937+caviri@users.noreply.github.com> Date: Tue, 25 Jun 2024 14:20:59 +0200 Subject: [PATCH 5/7] =?UTF-8?q?fix(dependencies):=20Removing=20pyarrow=20a?= =?UTF-8?q?nd=20freezing=20numpy=20to=20<2=20to=20avoid=E2=80=A6=20(#155)?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit fix(dependencies): Removing pyarrow and freezing numpy to <2 to avoid errors and warnings --- Dockerfile | 23 +++++------------------ pyproject.toml | 13 +++++-------- 2 files changed, 10 insertions(+), 26 deletions(-) diff --git a/Dockerfile b/Dockerfile index 4592281c..0e4ae60f 100644 --- a/Dockerfile +++ b/Dockerfile @@ -44,29 +44,16 @@ RUN wget https://www.python.org/ftp/python/3.11.0/Python-3.11.0.tar.xz \ # Remove the Python source and tarball to reduce image size RUN rm -rf Python-3.11.0.tar.xz Python-3.11.0 -# Install Python and Poetry -RUN python3 -m ensurepip && \ - pip3 install --upgrade pip setuptools - -# Install PyArrow in ALPINE -## https://stackoverflow.com/questions/49059779/how-to-install-pyarrow-on-an-alpine-docker-image/53116069#53116069 -## https://discuss.streamlit.io/t/anyone-tried-to-install-streamlit-in-alpine-docker-image/56893 -RUN apk update && apk add \ - apache-arrow-dev \ - py3-pyarrow \ - && rm -rf /var/lib/apt/lists/* - -RUN pip3 install --upgrade pip && \ - pip3 install --break-system-packages numpy pyarrow==12.0.0 - -# Add your application's source code +# Adding odtp source code and installing it. COPY . /app WORKDIR /app RUN pip3 install --break-system-packages $PIP_INSTALL_ARGS . +# Symbolic link to ODTP_PATH to facilitate debugging +RUN ln -s $ODTP_PATH /ODTP_PATH + # Symbolic link between python and python3 -RUN rm /usr/bin/python RUN ln -s /usr/local/bin/python3 /usr/bin/python # Entry point in a sh session -ENTRYPOINT ["sh"] +ENTRYPOINT ["sh"] \ No newline at end of file diff --git a/pyproject.toml b/pyproject.toml index c5230b18..3a1988e1 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "odtp" -version = "0.3.0" +version = "0.3.1" description = "A tool to deploy and manage open digital twins" authors = ["caviri ", "sabinem "] license = "AGPL 3.0" @@ -8,20 +8,17 @@ readme = "README.md" [tool.poetry.dependencies] python = "^3.11" +requests = "2.32.3" pydantic = "2.5.2" +numpy = "1.26.4" typer = "0.9.0" pymongo = ">=4.6.3" python-dotenv = "^1.0.0" boto3 = "^1.33.13" -barfi = "^0.7.0" -streamlit = "^1.29.0" -st-pages = "^0.4.5" -streamlit-card = "^1.0.0" -pygwalker = "^0.3.17" -streamlit-aggrid = "^0.3.4.post3" nicegui = "1.4.24" directory-tree = "^0.0.4" + [tool.poetry.group.dev.dependencies] pytest = "^7.2.1" black = ">=24.3.0" @@ -32,4 +29,4 @@ requires = ["poetry-core"] build-backend = "poetry.core.masonry.api" [tool.poetry.scripts] -odtp = "odtp.cli.main:app" +odtp = "odtp.cli.main:app" \ No newline at end of file From 140743d1dbdb9b85cb98b4e3c453f65d09b9f05a Mon Sep 17 00:00:00 2001 From: Carlos Vivar Rios <45425937+caviri@users.noreply.github.com> Date: Tue, 25 Jun 2024 14:23:11 +0200 Subject: [PATCH 6/7] Updating version. --- pyproject.toml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/pyproject.toml b/pyproject.toml index c5230b18..02d94058 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "odtp" -version = "0.3.0" +version = "0.3.1" description = "A tool to deploy and manage open digital twins" authors = ["caviri ", "sabinem "] license = "AGPL 3.0" From 6c13beb1356977bff901b6eb670559de349731b2 Mon Sep 17 00:00:00 2001 From: sabinem <5292683+sabinem@users.noreply.github.com> Date: Thu, 27 Jun 2024 13:49:40 +0200 Subject: [PATCH 7/7] fix(pyproject.toml): add pandas as a dependency --- poetry.lock | 1445 +----------------------------------------------- pyproject.toml | 1 + 2 files changed, 6 insertions(+), 1440 deletions(-) diff --git a/poetry.lock b/poetry.lock index eff32223..44f01029 100644 --- a/poetry.lock +++ b/poetry.lock @@ -120,30 +120,6 @@ files = [ [package.dependencies] frozenlist = ">=1.1.0" -[[package]] -name = "altair" -version = "5.3.0" -description = "Vega-Altair: A declarative statistical visualization library for Python." -optional = false -python-versions = ">=3.8" -files = [ - 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