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    117 repositories

    • Bioinformatics_notes

      Public
      Bioinformatics and genomics resources
      MIT License
      •22•0•0•0•Updated Aug 31, 2021Aug 31, 2021

    • awesome

      Public
      Awesome resources on Bioinformatics, data science, machine learning, programming language (Python, Golang, R, Perl) and miscellaneous stuff.
      MIT License
      •178•1•0•0•Updated Aug 26, 2021Aug 26, 2021

    • bioinfokit

      Public
      Bioinformatics data analysis and visualization toolkit
      Python
      •
      MIT License
      •74•0•0•0•Updated Aug 13, 2021Aug 13, 2021

    • GenFam

      Public
      A web application and database for gene family‐based classification and functional enrichment analysis
      Python
      •
      MIT License
      •1•0•0•0•Updated Dec 24, 2020Dec 24, 2020

    • pindel

      Public
      Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants at single-based resolution from next-gen sequence data. It uses a pattern growth approach to identify the breakpoints of these variants from paired-end short reads.
      C++
      •
      GNU General Public License v3.0
      •91•0•0•0•Updated Jun 20, 2020Jun 20, 2020

    • DMRichR

      Public
      An executable and package for the statistical analysis and visualization of differentially methylated regions (DMRs) from CpG count matrices (Bismark cytosine reports)
      R
      •
      GNU General Public License v3.0
      •24•0•0•0•Updated Apr 30, 2020Apr 30, 2020

    • lambda

      Public
      LAMBDA – the Local Aligner for Massive Biological DatA
      C++
      •
      Other
      •20•0•0•0•Updated Apr 16, 2020Apr 16, 2020

    • MDS-for-gene-clustering

      Public
      Python
      •1•0•0•0•Updated Aug 26, 2018Aug 26, 2018

    • bioinformatics

      Public
      🔬 Path to a free self-taught education in Bioinformatics!
      1.1k•0•0•0•Updated Jul 23, 2018Jul 23, 2018

    • smartas

      Public
      📓Notebook of Climente-González et al. (2017), The Functional Impact of Alternative Splicing in Cancer.
      Jupyter Notebook
      •5•0•0•0•Updated Mar 5, 2018Mar 5, 2018

    • datasciencecom-mhealth

      Public
      A tutorial for datascience.com for classifying human activity from body motion and vital signs recordings.
      Jupyter Notebook
      •11•0•0•0•Updated Nov 1, 2017Nov 1, 2017

    • treernn

      Public
      Recurrent Neural Networks with tree structure in Tensorflow
      Python
      •27•0•0•0•Updated Jan 22, 2017Jan 22, 2017

    • bcbb

      Public
      Incubator for useful bioinformatics code, primarily in Python and R
      Python
      •242•0•0•0•Updated Sep 28, 2016Sep 28, 2016

    • onco_lnc

      Public
      Python
      •
      MIT License
      •16•0•0•0•Updated Jul 15, 2016Jul 15, 2016

    • GeneFinder

      Public
      This is the base repository for the gene-finder mini project.
      Python
      •71•0•0•0•Updated Apr 19, 2016Apr 19, 2016

    • awesome-math

      Public
      A curated list of awesome mathematics resources
      Python
      •1.2k•0•0•0•Updated Jan 27, 2016Jan 27, 2016

    • ete

      Public
      ETE is a Python programming toolkit for building, comparing, annotating, manipulating and visualising trees. It provides both a comprehensive API and a collection of command line tools, including utilities to work with the NCBI taxonomy tree.
      Python
      •
      GNU General Public License v3.0
      •223•0•0•0•Updated Jan 26, 2016Jan 26, 2016

    • cookbook

      Public
      Jupyter Notebook
      •9•0•0•0•Updated Jan 22, 2016Jan 22, 2016

    • Blueberries

      Public
      Perl
      •0•0•0•0•Updated Dec 26, 2015Dec 26, 2015

    • gatk-protected

      Public
      GATK4 development of the license-protected part of the toolkit
      Java
      •
      Other
      •20•0•0•0•Updated Dec 25, 2015Dec 25, 2015

    • transcriptome_compression

      Public
      Transcriptome prediction
      MATLAB
      •
      GNU General Public License v2.0
      •4•0•0•0•Updated Dec 24, 2015Dec 24, 2015

    • StateDataSetAnalysis

      Public
      Explore the relationship between a states Murder rate and other characteristics of the state, for example population, illiteracy rate, and more
      Apache License 2.0
      •1•0•0•0•Updated Dec 23, 2015Dec 23, 2015

    • RAffairsDataAnalysis

      Public
      Exploratory data analysis on the R Affairs data set
      Apache License 2.0
      •1•0•0•0•Updated Dec 23, 2015Dec 23, 2015

    • KaggleTitanicPrediction

      Public
      Predict survival rate of Titanic passengers using R
      Apache License 2.0
      •1•0•0•0•Updated Dec 23, 2015Dec 23, 2015

    • picard

      Public
      A set of tools (in Java) for working with next generation sequencing data in the BAM (http://samtools.github.io/hts-specs) format.
      Java
      •380•0•0•0•Updated Dec 22, 2015Dec 22, 2015

    • transcriptome_microsats

      Public
      Scripts used in evaluating microsatellite loci developed from transcriptomes
      Python
      •
      MIT License
      •5•0•0•0•Updated Dec 21, 2015Dec 21, 2015

    • RegulomeExplorer

      Public
      JavaScript
      •2•0•0•0•Updated Dec 21, 2015Dec 21, 2015

    • labs

      Public
      Rmd source files for the HarvardX series PH525x
      R
      •
      MIT License
      •2k•0•0•0•Updated Dec 19, 2015Dec 19, 2015

    • gephi

      Public
      trunk
      Java
      •
      Other
      •1.6k•0•0•0•Updated Dec 18, 2015Dec 18, 2015

    • varsim

      Public
      VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications
      Java
      •
      BSD 2-Clause "Simplified" License
      •31•0•0•0•Updated Dec 11, 2015Dec 11, 2015