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    17 repositories

    • spack

      Public
      A flexible package manager that supports multiple versions, configurations, platforms, and compilers.
      Python
      •
      Other
      •2.4k•0•0•0•Updated Jul 28, 2025Jul 28, 2025

    • Introduction_to_R

      Public
      A 5 module 'Introduction to R' course and accompanying data resources
      HTML
      •
      MIT License
      •0•1•0•0•Updated Jun 18, 2025Jun 18, 2025

    • rstudio_manager

      Public
      launch and manage RStudio servers as HPC jobs
      Python
      •
      MIT License
      •0•0•0•0•Updated May 19, 2025May 19, 2025

    • rstudio_image

      Public
      Dockerfile for the LMS RStudio image, building on rocker/rstudio
      MIT License
      •0•0•0•0•Updated May 6, 2025May 6, 2025

    • nf_qc

      Public
      Nextflow QC pipeline
      Nextflow
      •
      MIT License
      •0•0•0•0•Updated May 6, 2025May 6, 2025

    • nf_mod_utils

      Public
      Nextflow utilities submodule
      Nextflow
      •
      MIT License
      •0•0•0•0•Updated May 6, 2025May 6, 2025

    • nf_mod_multiqc

      Public
      Nextflow multiqc module
      Nextflow
      •
      MIT License
      •0•0•0•0•Updated Mar 4, 2025Mar 4, 2025

    • vscode_manager

      Public
      launch and manage code-server sessions as HPC jobs
      Python
      •
      MIT License
      •0•0•0•0•Updated Feb 1, 2025Feb 1, 2025

    • jupyter_manager

      Public
      Launch and manage Jupyter servers as HPC jobs
      Python
      •
      MIT License
      •0•0•0•0•Updated Dec 19, 2024Dec 19, 2024

    • af_plotter

      Public
      Generate pLDDT plots and PAE heatmaps from AlphaFold3 JSONs
      Python
      •
      MIT License
      •1•4•0•0•Updated Dec 17, 2024Dec 17, 2024

    • nf_mod_fastqc

      Public
      Nextflow fastqc module
      Nextflow
      •
      MIT License
      •0•0•0•0•Updated Oct 1, 2024Oct 1, 2024

    • nf_mod_sourmash

      Public
      Nextflow sourmash module
      Nextflow
      •
      MIT License
      •0•0•0•0•Updated Sep 19, 2024Sep 19, 2024

    • .github

      Public
      0•0•0•0•Updated Jun 13, 2024Jun 13, 2024

    • statistics_hypothesis_testing

      Public
      Statistics and hypothesis testing
      R
      •0•0•0•0•Updated Nov 27, 2023Nov 27, 2023

    • nf-core_configs

      Public
      Config files used to define parameters specific to compute environments at different Institutions
      Nextflow
      •
      MIT License
      •333•0•0•0•Updated Oct 2, 2023Oct 2, 2023

    • asset

      Public
      A tracker for shared assets on HPC clusters
      Python
      •
      MIT License
      •0•1•0•0•Updated Jul 26, 2023Jul 26, 2023

    • Karimi_2021_NatComms

      Public
      The order and logic of CD4 versus CD8 lineage choice and differentiation in mouse thymus
      HTML
      •
      MIT License
      •0•5•0•0•Updated Mar 1, 2021Mar 1, 2021