Repositories list

• website

  Public
  Our lab website.

  HTML

  •

  Apache License 2.0

  •1•0•0•0•Updated Nov 11, 2025Nov 11, 2025

• medi

  Public
  Metagenomic Estimation of Dietary Intake and Content.

  Nextflow

  •

  Apache License 2.0

  •5•0•0•0•Updated Nov 4, 2025Nov 4, 2025

• pipelines

  Public
  A monorepo containing all of our Nextflow pipelines.

  nextflowmetagenomicsmicrobiome+ 1metatranscriptomics

  Nextflow

  •

  Apache License 2.0

  •0•1•0•0•Updated Oct 30, 2025Oct 30, 2025

• talks

  Public
  Repository for public talk slides.

  JavaScript

  •

  Apache License 2.0

  •0•1•0•0•Updated Jun 30, 2025Jun 30, 2025

• template

  Public template
  Repository containing scripts and additional data for [PROJECT].

  systems-biologymetagenomicsmicrobial-ecology

  Apache License 2.0

  •0•0•0•0•Updated Apr 29, 2025Apr 29, 2025

• 2025_meduni_microbiome

  Public
  Materials for the 2025 Microbiome course in the MOLMED PhD program.

  R

  •

  Apache License 2.0

  •0•1•0•0•Updated Mar 25, 2025Mar 25, 2025

• miso

  Public
  An R package containing a bunch of helpers for microbiome data analysis.

  R

  •

  Apache License 2.0

  •0•0•0•0•Updated Jan 21, 2025Jan 21, 2025

• gapseq-docker

  Public
  A docker image for gapseq.

  Dockerfile

  •

  Apache License 2.0

  •1•0•0•0•Updated Nov 21, 2024Nov 21, 2024

• .github

  Public
  Lab manuals, policies and highlights.

  Shell

  •0•0•0•0•Updated Sep 13, 2024Sep 13, 2024

• nextflow_intro

  Public
  Intro to Nextflow and instructions on how to run pipelines at the MedUni Graz.

  Nextflow

  •

  Apache License 2.0

  •0•0•0•0•Updated May 17, 2024May 17, 2024

• 2024_micom_intro

  Public
  A short intro to MICOM.

  Jupyter Notebook

  •

  Apache License 2.0

  •0•1•0•0•Updated Apr 5, 2024Apr 5, 2024