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@emonetlab Emonet Lab

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    18 repositories

    • emonetlab

      Public
      emonet lab website
      SCSS
      •
      MIT License
      •0•0•0•0•Updated Oct 30, 2025Oct 30, 2025

    • nongenetic-adaptation-wave

      Public
      A repository contains the scripts to reproduce the results presented in the manuscript titled **_Nongenetic adaptation by collective migration_** Copyright 2025 Lam Vo, Fotios Avgidis, Henry Mattingly, Karah Edmonds, Isabel Burger, Ravi Balasubramanian, Thomas S. Shimizu, Barbara I. Kazmierczak, and Thierry Emonet
      MATLAB
      •0•0•0•0•Updated Feb 11, 2025Feb 11, 2025

    • bifurcation-temporal-information

      Public
      Python code for manuscript titled 'Bifurcation enhances temporal information encoding in the olfactory periphery'
      Python
      •
      GNU General Public License v3.0
      •1•1•0•0•Updated Sep 15, 2024Sep 15, 2024

    • SensoryDiversityTuningAnalysis

      Public
      Matlab code to accompany 'Orthogonal tuning of sensory diversity across multiple stimuli'
      MATLAB
      •0•0•0•0•Updated Mar 29, 2024Mar 29, 2024

    • opto-track

      Public
      Code to deliver fictive odor stimuli while tracking flies with real-time closed-loop feedback
      Python
      •0•1•0•0•Updated Sep 5, 2022Sep 5, 2022

    • B-FRET

      Public
      Extract FRET signals from noisy FRET data using Bayesian statistical inference
      MATLAB
      •2•3•0•0•Updated Jul 5, 2022Jul 5, 2022

    • ks

      Public
      Code for simulating a Keller-Segel type of collective bacterial migration with multiple phenotypes, growth, and inheritance, in liquid and porous environments.
      MATLAB
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated May 5, 2022May 5, 2022

    • plume-temporal-navigation

      Public
      Python
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Jul 26, 2021Jul 26, 2021

    • fly-walk-sims

      Public
      Simulate virtual agents navigating an odor plume
      Python
      •
      GNU General Public License v3.0
      •0•4•0•0•Updated Oct 16, 2020Oct 16, 2020

    • fly-walk

      Public
      MATLAB
      •
      GNU General Public License v3.0
      •2•3•0•0•Updated Oct 15, 2020Oct 15, 2020

    • microbetracker

      Public
      MicrobeTracker Suite is a MATLAB-based software package designed to detect and outline bacterial cells in microscopy images and to analyze fluorescence signal inside them.
      0•0•0•0•Updated Jan 20, 2020Jan 20, 2020

    • controlling-dynamic-stimuli

      Public
      Controlling and measuring dynamic odorant stimuli in the lab
      pidmfcodor-controlphoto-ionization-detectorodor-stimulation
      MATLAB
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Nov 25, 2019Nov 25, 2019

    • ORN-WL-gain-control

      Public
      Investigate impact of ORN adaptation on odor reconstruction fidelity
      Python
      •
      Other
      •2•1•0•0•Updated Jul 4, 2019Jul 4, 2019

    • Mechanical-Information-Propagation

      Public
      Fortran
      •0•0•0•0•Updated Dec 23, 2018Dec 23, 2018

    • spikesort

      Public
      Fast, powerful spike sorting of extracellular neuron recordings. 99.5% accuracy.
      MATLAB
      •
      GNU General Public License v3.0
      •9•1•0•0•Updated Oct 15, 2018Oct 15, 2018

    • zebrafish-cell-motion

      Public
      Fortran
      •1•0•0•0•Updated Jun 21, 2017Jun 21, 2017

    • nfsim

      Public
      A general-purpose, stochastic, biochemical reaction simulator for large reaction networks
      C++
      •
      MIT License
      •19•0•0•0•Updated Mar 6, 2017Mar 6, 2017

    • kontroller

      Public
      A MATLAB package for NI-DAQ to help you do experiments. Kontroller has a easy-to-use GUI, with support for automation and is fully programmable.
      MATLAB
      •
      GNU General Public License v3.0
      •2•1•0•0•Updated Jan 10, 2017Jan 10, 2017