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Weng Lab

All

116 repositories

web-components
Public
Shared web components across the Weng/Moore lab suite of genomics research tools
TypeScript
•0•0•13•0•Updated Nov 12, 2025Nov 12, 2025
SCREEN3.0
Public
TypeScript
•
MIT License
•0•1•39•1•Updated Nov 7, 2025Nov 7, 2025
bkresge
Public
Jupyter Notebook
•0•0•0•0•Updated Nov 7, 2025Nov 7, 2025
Factorbook2.0
Public template
TypeScript
•0•3•12•5•Updated Nov 4, 2025Nov 4, 2025
atac-smk
Public
ATAC-seq pipeline
Jupyter Notebook
•1•0•0•0•Updated Nov 4, 2025Nov 4, 2025
igSCREEN
Public
TypeScript
•
MIT License
•1•1•19•1•Updated Nov 3, 2025Nov 3, 2025
genomebrowser
Public
TypeScript
•
MIT License
•0•1•7•0•Updated Nov 3, 2025Nov 3, 2025
bigwig-reader
Public
Typescript library for reading BigWig and BigBed files.
visualization bioinformatics typescript-library reader dataloader bigwig-reader bigbed-files
TypeScript
•
MIT License
•6•8•0•3•Updated Oct 20, 2025Oct 20, 2025
signal-service
Public
Service for signal and peak data
TypeScript
•
MIT License
•0•2•0•8•Updated Oct 20, 2025Oct 20, 2025
SCREEN2.0
Public
TypeScript
•
MIT License
•0•6•30•6•Updated Oct 15, 2025Oct 15, 2025
zlabwiki
Public
HTML
•
MIT License
•0•0•0•0•Updated Oct 14, 2025Oct 14, 2025
psychscreen
Public
PsychSCREEN
TypeScript
•
MIT License
•1•2•0•0•Updated Oct 14, 2025Oct 14, 2025
ENCODE-cCREs
Public
Pipelines to create and analyze ENCODE candidate cis-Regulatory Elements
Shell
•7•25•6•0•Updated Oct 7, 2025Oct 7, 2025
genomebrowser-app
Public
TypeScript
•1•1•0•0•Updated Oct 3, 2025Oct 3, 2025
dna-methylation-code
Public
Code from DNA methylation project in summer 2025
Jupyter Notebook
•0•0•0•0•Updated Sep 4, 2025Sep 4, 2025
TEMP2
Public
Algorithm to detect germline and de novo transposon insertions
Shell
•
GNU General Public License v3.0
•7•31•0•0•Updated Aug 14, 2025Aug 14, 2025
psychscreen-ui-components
Public
common UI components for PsychSCREEN
TypeScript
•
MIT License
•0•1•32•0•Updated Jun 24, 2025Jun 24, 2025
logojs-package
Public
Javascript package for embedding sequence logos
javascript svg bioinformatics reactjs data-visualization javascript-library sequence-logo dna-logo
JavaScript
•
MIT License
•6•17•4•7•Updated Jun 16, 2025Jun 16, 2025
download-encode
Public
Jupyter Notebook
•0•0•0•0•Updated Apr 7, 2025Apr 7, 2025
nshedd
Public
Nicole's code and stuff
Python
•0•0•0•0•Updated Feb 21, 2025Feb 21, 2025
dnaseseq-workflow
Public
Kotlin
•0•0•0•0•Updated Dec 17, 2024Dec 17, 2024
cluster-buster
Public
C++
•2•9•1•1•Updated Sep 27, 2024Sep 27, 2024
VIPER
Public
Variant interpretation pipeline and resource
Shell
•
MIT License
•0•0•0•0•Updated Jun 27, 2024Jun 27, 2024
SCREEN
Public
JavaScript
•
MIT License
•2•9•61•9•Updated Mar 1, 2024Mar 1, 2024
dictys
Public
Python
•
GNU Affero General Public License v3.0
•0•0•0•0•Updated Feb 20, 2024Feb 20, 2024
docker-nss
Public
libnss plugin for Docker
C
•7•0•0•0•Updated Jan 26, 2024Jan 26, 2024
libzdock
Public
ZDOCK predictions and PDB structures in C++ and Python
cpp pdb structure transformation receptor ligand zdock libpdb m-zdock zlab
C++
•
BSD 2-Clause "Simplified" License
•4•12•0•0•Updated Jan 1, 2024Jan 1, 2024
ATLAS
Public
Altered TCR Ligand Affinities and Structures
HTML
•
GNU General Public License v3.0
•2•11•5•0•Updated Dec 1, 2023Dec 1, 2023
chrombpnet-workflow
Public
Krews workflow for running ChromBPNet
Python
•
MIT License
•0•0•0•0•Updated Nov 18, 2023Nov 18, 2023
krews
Public
KREWS Scientific Data Pipeline Framework
kotlin workflows analysis-pipeline
Kotlin
•0•3•0•0•Updated Oct 25, 2023Oct 25, 2023