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    116 repositories

    • genomebrowser

      Public
      TypeScript
      •0•1•7•0•Updated Nov 13, 2025Nov 13, 2025

    • Factorbook2.0

      Public template
      TypeScript
      •0•3•12•5•Updated Nov 13, 2025Nov 13, 2025

    • web-components

      Public
      Shared web components across the Weng/Moore lab suite of genomics research tools
      TypeScript
      •0•0•14•0•Updated Nov 12, 2025Nov 12, 2025

    • SCREEN3.0

      Public
      TypeScript
      •
      MIT License
      •0•1•41•1•Updated Nov 7, 2025Nov 7, 2025

    • bkresge

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Nov 7, 2025Nov 7, 2025

    • atac-smk

      Public
      ATAC-seq pipeline
      Jupyter Notebook
      •1•0•0•0•Updated Nov 4, 2025Nov 4, 2025

    • igSCREEN

      Public
      TypeScript
      •
      MIT License
      •1•1•19•1•Updated Nov 3, 2025Nov 3, 2025

    • bigwig-reader

      Public
      Typescript library for reading BigWig and BigBed files.
      visualizationbioinformaticstypescript-libraryreaderdataloaderbigwig-readerbigbed-files
      TypeScript
      •
      MIT License
      •6•8•0•3•Updated Oct 20, 2025Oct 20, 2025

    • signal-service

      Public
      Service for signal and peak data
      TypeScript
      •
      MIT License
      •0•2•0•8•Updated Oct 20, 2025Oct 20, 2025

    • SCREEN2.0

      Public
      TypeScript
      •
      MIT License
      •0•6•30•6•Updated Oct 15, 2025Oct 15, 2025

    • zlabwiki

      Public
      HTML
      •
      MIT License
      •0•0•0•0•Updated Oct 14, 2025Oct 14, 2025

    • psychscreen

      Public
      PsychSCREEN
      TypeScript
      •
      MIT License
      •1•2•0•0•Updated Oct 14, 2025Oct 14, 2025

    • ENCODE-cCREs

      Public
      Pipelines to create and analyze ENCODE candidate cis-Regulatory Elements
      Shell
      •7•25•6•0•Updated Oct 7, 2025Oct 7, 2025

    • genomebrowser-app

      Public
      TypeScript
      •1•1•0•0•Updated Oct 3, 2025Oct 3, 2025

    • dna-methylation-code

      Public
      Code from DNA methylation project in summer 2025
      Jupyter Notebook
      •0•0•0•0•Updated Sep 4, 2025Sep 4, 2025

    • TEMP2

      Public
      Algorithm to detect germline and de novo transposon insertions
      Shell
      •
      GNU General Public License v3.0
      •7•31•0•0•Updated Aug 14, 2025Aug 14, 2025

    • psychscreen-ui-components

      Public
      common UI components for PsychSCREEN
      TypeScript
      •
      MIT License
      •0•1•32•0•Updated Jun 24, 2025Jun 24, 2025

    • logojs-package

      Public
      Javascript package for embedding sequence logos
      javascriptsvgbioinformaticsreactjsdata-visualizationjavascript-librarysequence-logodna-logo
      JavaScript
      •
      MIT License
      •6•17•4•7•Updated Jun 16, 2025Jun 16, 2025

    • download-encode

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Apr 7, 2025Apr 7, 2025

    • nshedd

      Public
      Nicole's code and stuff
      Python
      •0•0•0•0•Updated Feb 21, 2025Feb 21, 2025

    • dnaseseq-workflow

      Public
      Kotlin
      •0•0•0•0•Updated Dec 17, 2024Dec 17, 2024

    • cluster-buster

      Public
      C++
      •2•9•1•1•Updated Sep 27, 2024Sep 27, 2024

    • VIPER

      Public
      Variant interpretation pipeline and resource
      Shell
      •
      MIT License
      •0•0•0•0•Updated Jun 27, 2024Jun 27, 2024

    • SCREEN

      Public
      JavaScript
      •
      MIT License
      •2•9•61•9•Updated Mar 1, 2024Mar 1, 2024

    • dictys

      Public
      Python
      •
      GNU Affero General Public License v3.0
      •0•0•0•0•Updated Feb 20, 2024Feb 20, 2024

    • docker-nss

      Public
      libnss plugin for Docker
      C
      •7•0•0•0•Updated Jan 26, 2024Jan 26, 2024

    • libzdock

      Public
      ZDOCK predictions and PDB structures in C++ and Python
      cpppdbstructuretransformationreceptorligandzdocklibpdbm-zdockzlab
      C++
      •
      BSD 2-Clause "Simplified" License
      •4•12•0•0•Updated Jan 1, 2024Jan 1, 2024

    • ATLAS

      Public
      Altered TCR Ligand Affinities and Structures
      HTML
      •
      GNU General Public License v3.0
      •2•11•5•0•Updated Dec 1, 2023Dec 1, 2023

    • chrombpnet-workflow

      Public
      Krews workflow for running ChromBPNet
      Python
      •
      MIT License
      •0•0•0•0•Updated Nov 18, 2023Nov 18, 2023

    • krews

      Public
      KREWS Scientific Data Pipeline Framework
      kotlinworkflowsanalysis-pipeline
      Kotlin
      •0•3•0•0•Updated Oct 25, 2023Oct 25, 2023