Thanks to visit codestin.com
Credit goes to github.com

Skip to content

Mapss T2 calculation requires mask[BUG] #136

New issue
New issue
Open
Open
Mapss T2 calculation requires mask[BUG]#136
@gattia

Description

@gattia
gattia
opened on Oct 27, 2023

Describe the bug
A clear and concise description of what the bug is.

DOSMA/dosma/scan_sequences/mri/mapss.py

Lines 225 to 232 in bd5efec

# only calculate for focused region if a mask is available, this speeds up computation
mask = tissue.get_mask()
if mask_path is not None:
mask = (
fio_utils.generic_load(mask_path, expected_num_volumes=1)
if isinstance(mask_path, (str, os.PathLike))
else mask_path
)

The above section of code shows that the tissue class is required for the T2 generation to go through. If the tissue class is not present then .get_mask() will fail (None type does not have the function). However, tissue class is meant to be optional.

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions