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Achievement: Pull Sharkx3Achievement: Pair ExtraordinaireAchievement: QuickdrawAchievement: YOLOAchievement: StarstruckAchievement: Arctic Code Vault Contributor

Achievements

Achievement: Pull Sharkx3Achievement: Pair ExtraordinaireAchievement: QuickdrawAchievement: YOLOAchievement: StarstruckAchievement: Arctic Code Vault Contributor

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@COMBINE-Canberra @bioconda

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adamtaranto/README.md

Adam Taranto

I'm a research software engineer, genome biologist, and educator who helps researchers of all levels improve their computer science and data science skills.

👩‍💻 What I'm currently working on

  • Adamtaranto/TIRmite - Annotation of cryptic transposon variants using Hidden Markov Models to detect conserved terminal features. (today)
  • Adamtaranto/tSplit - Extract terminal repeats from retrotransposons (LTRs) or DNA transposons (TIRs). Compose synthetic MITES from complete DNA transposons. (today)
  • bioconda/bioconda-recipes - Conda recipes for the bioconda channel. (5 days ago)
  • WEHI-Education/Workshop-intermediate-slurm - Intermedate Slurm Workshop source code using the Software Carpentry Workbench style. (1 week ago)
  • tanghaibao/jcvi - Python library to facilitate genome assembly, annotation, and comparative genomics (3 weeks ago)

🔭 Latest releases I've contributed to

  • Adamtaranto/tSplit (v0.2.0, today) - Extract terminal repeats from retrotransposons (LTRs) or DNA transposons (TIRs). Compose synthetic MITES from complete DNA transposons.
  • Adamtaranto/TIRmite (v1.3.0, 5 days ago) - Annotation of cryptic transposon variants using Hidden Markov Models to detect conserved terminal features.
  • tseemann/mlst (v2.32.2, 2 weeks ago) - 🆔 Scan contig files against PubMLST typing schemes
  • qjiangzhao/TEtrimmer (v1.6.2, 1 month ago) - TEtrimmer: a novel tool to automate manual curation of transposable elements
  • flexidot-bio/flexidot (v2.0.2, 2 months ago) - Highly customizable, ambiguity-aware dotplots for visual sequence analyses

GitHub Streak

GitHub Stats

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  1. teloclip teloclip Public

    A tool for the recovery of unassembled telomeres from soft-clipped read alignments.

    Python 50 4

  2. TIRmite TIRmite Public

    Annotation of cryptic transposon variants using Hidden Markov Models to detect conserved terminal features.

    Python 10 4

  3. deRIP2 deRIP2 Public

    Reconstruct ancestral state sequences of fungal repeat families by correcting for RIP-like mutations. Mask RIP or deamination events from alignments.

    Python

  4. TRF2GFF TRF2GFF Public

    Convert Tandem Repeat Finder dat file output into gff3 format

    Python 30 6