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Commits on May 17, 2025

• Merge pull request #1 from alexvpickering/alexvpickering-patch-1

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• fix pairedMSA

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Commits on Apr 28, 2025

• Merge pull request #22 from SLx64/dev

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• Bump version to 0.4.2

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• improved CLI documentation

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• added citation section

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Commits on Mar 18, 2025

• Update README.md

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• Update README with Bash version requirement for examples

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• Update af3cli version to 0.4.1

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• Update README to document new 'data/' example directory

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• Add installation instructions for pip and PyPI in README

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Commits on Feb 19, 2025

• Merge pull request #19 from SLx64/dev-0.4.0

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Commits on Feb 11, 2025

• Update version to 0.4.0

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• Update README to include new the ID handling improvements

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• Log message clarifying ID assignment for SDF conversion.

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• Enforce single SMILES string input for af3cli.

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• Refactor sequence ID management and testing logic.

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• Ensure proper validation and handling of ligand input.

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• Fix duplicate seeds handling in test_builder_set_seeds.

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Commits on Jan 26, 2025

• Update README.md

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• Merge pull request #16 from SLx64/dev

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• Bump version to 0.3.1.

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• improved formating and removed unused imports

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• Add tests for IDRecord class in seqid module

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• Set default value of `num` parameter to 1 in ligand classes

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• Refactor sequence ID initialization and sanitization.

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• Refactor sequence ID handling in seqid and input modules.

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Commits on Jan 24, 2025

• Merge pull request #15 from SLx64/refactoring

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• removed lock to update the dependencies

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• version 0.3.0

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• some minor improvements in README

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• Update README.md to include examples for improved sequence handling and new features

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• Refactor sequence and ligand handling for improved clarity

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• Refactor sequence handling to use specific sequence classes

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• Add reverse_complement method to DNASequence

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