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Commits on Sep 8, 2025

• Release v0.8.4

  althonos

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  b3af3b2

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• Fix issues with platform detection on Arm CPUs

  althonos

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  987ad11

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• Fix portability issues in `readbuf` due to C++ `std::streampos`

  althonos

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• Add back wheel generation for Aarch64 MacOS target

  althonos

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  4289eaa

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• Fix issue with platform initialization logic in `BaseTrimmer`

  althonos

  committed
  e7fa283

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• Release v0.8.3

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Commits on Sep 5, 2025

• Bump `trimAl` to the latest `2.0_RC` commit

  althonos

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  e1fc073

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• Fix `SimilarityMatrix.from_name` to allow using built-in matrices from `scoring-matrices`

  althonos

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  e448fac

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• Expose the sequence type of an `Alignment` as a property

  althonos

  committed
  77259e0

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• Fix potential segfault caused by incorrect detection of `Alignment` alphabet

  althonos

  committed
  73a21fb

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Commits on Aug 20, 2025

• Revert back to `inab/trimal` upstream

  althonos

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Commits on Aug 18, 2025

• Fix download badges in `README.md` and `docs/index.rst` [ci skip]

  althonos

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  3ac63b6

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• Release v0.8.2

  althonos

  committed
  739fc6e

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• Fix issue with example data inclusion in `sdist`

  althonos

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  d0744c1

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• Reorganize documentation to have examples in a dedicated section

  althonos

  committed
  f273c1e

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• Add test to ensure `RepresentativeTrimmer(clusters=n)` keeps at most `n` sequences

  althonos

  committed
  0a21906

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• Regenerate patches and test files for `RepresentativeTrimmer`

  althonos

  committed
  65e1e74

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• Include additional fixes from `trimal` (inab/trimal#118)

  althonos

  committed
  f1d9001

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• Update `trimal` to fix `-clusters` trimming (#5)

  althonos

  committed
  6e7a431

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Commits on May 7, 2025

• Fix typo and deactivate environment in `PKGBUILD.in` [ci skip]

  althonos

  committed
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Commits on May 6, 2025

• Silence warning in `TestAutomaticTrimmer.test_invalid_characters`

  althonos

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  95484a4

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• Add test for `automated2` method

  althonos

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  b8860dc

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• Replace test files with symlinks to `trimal` test files

  althonos

  committed
  fc987bc

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• Add new `automated2` method to `AutomaticTrimmer`

  althonos

  committed
  72adfe8

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• Remove code for Python 3.5 support from `pytrimal.tests`

  althonos

  committed
  7471e9e

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• Update outdated patches for trimAl sources

  althonos

  committed
  1fde0fd

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• Bump `vendor/trimal` to latest `2.0_RC` commit

  althonos

  committed
  514b267

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• Release v0.8.1

  althonos

  committed
  3dc4b5d

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• Add missing patches for undeclared `uint32_t` in trimAl sources

  althonos

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• Override Apple Silicon platform detection in `pyproject.toml`

  althonos

  committed
  e39050e

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• Fix unneeded test files from `trimAl` included in `sdist`

  althonos

  committed
  8b18a62

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• Fix issue with copying of patched files in `sdist`

  althonos

  committed
  aec49af

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Commits on Mar 5, 2025

• Fix `git` submodules not being cloned recursively in `package.yml`

  althonos

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Commits on Mar 4, 2025

• Remove debug print in `CythonExtension.cmake`

  althonos

  committed
  0671f9f

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• Fix runtime detection of SSE2 on Windows [ci skip]

  althonos

  committed
  e966026

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