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Commits on Sep 15, 2022

• Adding in MSA method to align between gaps.

  benedictpaten

  committed
  5cbc158

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Commits on Apr 29, 2020

• Fixing stList_sort2 function to work across platforms using custom sort_r function.

  benedictpaten

  committed
  1040ab0

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Commits on Apr 7, 2020

• another memory leak fix for list_removeInterval

  tpesout

  committed
  5d609ac

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Commits on Apr 6, 2020

• fixing mem leak in list function

  tpesout

  committed
  c553d5a

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• Merge branch 'master' of https://github.com/benedictpaten/sonLib into HEAD

  tpesout

  committed
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Commits on Mar 31, 2020

• Tests mostly passing for stitch code.

  benedictpaten

  committed
  19cbc62

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Commits on Mar 26, 2020

• Adding method to sonLib stList to remove a specified interval of the list.

  benedictpaten

  committed
  b4a6829

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Commits on Mar 25, 2020

• Adding in nearly complete chunk stitching code to margin

  benedictpaten

  committed
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Commits on Dec 17, 2019

• reverting back to old qsort implementation for cases wehre openmp isn't installed so it can run on a mac which doesn't have openmp and also has a fucked up implementation of qsort_r fml

  tpesout

  committed
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Commits on Dec 10, 2019

• Merge pull request #36 from mr-c/hardening

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  glennhickey

  authored
  63b0301

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Commits on Dec 9, 2019

• Make build system more flexible

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  mr-c

  committed
  cbda448

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Commits on Apr 2, 2019

• adding a header entry for a fasta read to map function

  tpesout

  committed
  2105969

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Commits on Jan 28, 2019

• fixing bugs during threadsafeting

  tpesout

  committed
  3ca9031

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Commits on Jan 27, 2019

• inverting some argments for listSort

  tpesout

  committed
  9084d1f

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• Attempt to fix non-thread safe sort functions.

  benedictpaten

  committed
  4433ba8

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Commits on Jan 25, 2019

• first pass at making sonLib threadsafe

  tpesout

  committed
  feac3fc

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Commits on Jan 16, 2019

• removing static variable from stString_print

  tpesout

  committed
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Commits on Nov 3, 2018

• Adding some json parsing functions.

  benedictpaten

  committed
  1decb75

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Commits on Oct 30, 2018

• Merge branch 'master' of [email protected]:benedictpaten/sonLib.git

  benedictpaten

  committed
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• Adding fasta read function.

  benedictpaten

  committed
  eec1dfe

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Commits on Sep 17, 2018

• Merge pull request #34 from adamnovak/clang

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  benedictpaten

  authored
  c51f0ae

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Commits on Sep 14, 2018

• Don't return types of unknown size by value to appease Clang

  adamnovak

  committed
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Commits on Jun 22, 2018

• Fix compilation on systems without gcc

  joelarmstrong

  committed
  e7ef98b

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Commits on Nov 23, 2017

• Merge pull request #31 from adamnovak/hash-good

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  joelarmstrong

  authored
  265d6c5

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Commits on Nov 22, 2017

• Fix Travis on OS X

  adamnovak

  committed
  137ba24

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• Make pointer hashing an actual hash function

  adamnovak

  committed
  983069b

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Commits on Aug 9, 2017

• Adding removeAll function to stSet.

  benedictpaten

  committed
  1afbd97

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Commits on Mar 26, 2017

• Merge branch 'master' of [email protected]:benedictpaten/sonLib.git

  benedictpaten

  committed
  4290072

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• Adding/modifying functions for marginPhase

  benedictpaten

  committed
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Commits on Jan 7, 2017

• Update fastaDecodeHeader to not throw away extraneous '|'s

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  joelarmstrong

  committed
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Commits on Oct 14, 2016

• Stop explicitly passing stdout=sys.stdout, etc to subprocess.call

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  joelarmstrong

  committed
  25857ed

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Commits on Oct 10, 2016

• Fix exponential growth in reconcileAtMostBinary

  Show description for 8bd68c5
  joelarmstrong

  committed
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Commits on Oct 4, 2016

• Travis's OSX gcc doesn't support -fsanitize=address

  joelarmstrong

  committed
  97ddd84

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• Fix memory errors and leaks, and enable memory leak detection in CI

  joelarmstrong

  committed
  0003c4a

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Commits on Oct 3, 2016

• Add -std=c99 to placate the ever-shifting GCC defaults

  joelarmstrong

  committed
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