(conda_env) cbrisl@mac folder % redbiom search metadata beer | wc -l


Traceback (most recent call last):
  File "/Users/cbrisl/miniforge3/envs/qiime2-amplicon-2024.10/bin/redbiom", line 10, in <module>
    sys.exit(cli())
  File "/Users/cbrisl/miniforge3/envs/qiime2-amplicon-2024.10/lib/python3.10/site-packages/click/core.py", line 1157, in __call__
    return self.main(*args, **kwargs)
  File "/Users/cbrisl/miniforge3/envs/qiime2-amplicon-2024.10/lib/python3.10/site-packages/click/core.py", line 1078, in main
    rv = self.invoke(ctx)
  File "/Users/cbrisl/miniforge3/envs/qiime2-amplicon-2024.10/lib/python3.10/site-packages/click/core.py", line 1688, in invoke
    return _process_result(sub_ctx.command.invoke(sub_ctx))
  File "/Users/cbrisl/miniforge3/envs/qiime2-amplicon-2024.10/lib/python3.10/site-packages/click/core.py", line 1688, in invoke
    return _process_result(sub_ctx.command.invoke(sub_ctx))
  File "/Users/cbrisl/miniforge3/envs/qiime2-amplicon-2024.10/lib/python3.10/site-packages/click/core.py", line 1434, in invoke
    return ctx.invoke(self.callback, **ctx.params)
  File "/Users/cbrisl/miniforge3/envs/qiime2-amplicon-2024.10/lib/python3.10/site-packages/click/core.py", line 783, in invoke
    return __callback(*args, **kwargs)
  File "/Users/cbrisl/miniforge3/envs/qiime2-amplicon-2024.10/lib/python3.10/site-packages/redbiom/commands/search.py", line 123, in search_metadata
    for i in redbiom.search.metadata_full(query, categories):
  File "/Users/cbrisl/miniforge3/envs/qiime2-amplicon-2024.10/lib/python3.10/site-packages/redbiom/search.py", line 53, in metadata_full
    samples.update(redbiom.set_expr.seteval(q, get=get,
  File "/Users/cbrisl/miniforge3/envs/qiime2-amplicon-2024.10/lib/python3.10/site-packages/redbiom/set_expr.py", line 93, in seteval
    result = eval(ast.dump(formed))
  File "<string>", line 1, in <module>
  File "/Users/cbrisl/miniforge3/envs/qiime2-amplicon-2024.10/lib/python3.10/site-packages/redbiom/set_expr.py", line 14, in Name
    stem = next(stemmer(id))
  File "/Users/cbrisl/miniforge3/envs/qiime2-amplicon-2024.10/lib/python3.10/site-packages/redbiom/util.py", line 353, in stems
    for word in nltk.tokenize.word_tokenize(string):
  File "/Users/cbrisl/miniforge3/envs/qiime2-amplicon-2024.10/lib/python3.10/site-packages/nltk/tokenize/__init__.py", line 142, in word_tokenize
    sentences = [text] if preserve_line else sent_tokenize(text, language)
  File "/Users/cbrisl/miniforge3/envs/qiime2-amplicon-2024.10/lib/python3.10/site-packages/nltk/tokenize/__init__.py", line 119, in sent_tokenize
    tokenizer = _get_punkt_tokenizer(language)
  File "/Users/cbrisl/miniforge3/envs/qiime2-amplicon-2024.10/lib/python3.10/site-packages/nltk/tokenize/__init__.py", line 105, in _get_punkt_tokenizer
    return PunktTokenizer(language)
  File "/Users/cbrisl/miniforge3/envs/qiime2-amplicon-2024.10/lib/python3.10/site-packages/nltk/tokenize/punkt.py", line 1744, in __init__
    self.load_lang(lang)
  File "/Users/cbrisl/miniforge3/envs/qiime2-amplicon-2024.10/lib/python3.10/site-packages/nltk/tokenize/punkt.py", line 1749, in load_lang
    lang_dir = find(f"tokenizers/punkt_tab/{lang}/")
  File "/Users/cbrisl/miniforge3/envs/qiime2-amplicon-2024.10/lib/python3.10/site-packages/nltk/data.py", line 579, in find
    raise LookupError(resource_not_found)
LookupError: 
**********************************************************************
  Resource punkt_tab not found.
  Please use the NLTK Downloader to obtain the resource:

  >>> import nltk
  >>> nltk.download('punkt_tab')
  
  For more information see: https://www.nltk.org/data.html

  Attempted to load tokenizers/punkt_tab/english/

  Searched in:
    - '/Users/cbrisl/miniforge3/envs/qiime2-amplicon-2024.10/lib/python3.10/site-packages/redbiom/assets/nltk_data'
    - '/Users/cbrisl/nltk_data'
    - '/Users/cbrisl/miniforge3/envs/qiime2-amplicon-2024.10/nltk_data'
    - '/Users/cbrisl/miniforge3/envs/qiime2-amplicon-2024.10/share/nltk_data'
    - '/Users/cbrisl/miniforge3/envs/qiime2-amplicon-2024.10/lib/nltk_data'
    - '/usr/share/nltk_data'
    - '/usr/local/share/nltk_data'
    - '/usr/lib/nltk_data'
    - '/usr/local/lib/nltk_data'
**********************************************************************

  >>> import nltk
  >>> nltk.download('punkt_tab')