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Commits on Jan 25, 2024

• Update README.md

  devgg

  authored
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Commits on Nov 24, 2021

• use python 3 for pybind11

  

  Timo Bingmann

  committed
  1cd6df2

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• Merge pull request #21 from jnalanko/master

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  bingmann

  authored
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Commits on Nov 23, 2021

• Support all fasta file extensions listed in Wikipedia

  jnalanko

  committed
  7d1c031

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Commits on Aug 17, 2020

• Merge branch 'dev' into master

  bingmann

  committed
  1915fc0

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• remove cobs::string_view and using updated tlx::string_view

  bingmann

  committed
  3d928d8

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• change CortexFile reader to handle any k, fix issue #14

  bingmann

  committed
  99c2efb

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• kmer: move data tables into .cpp

  bingmann

  committed
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Commits on Aug 13, 2020

• Merge branch 'dev' into master

  bingmann

  committed
  03b6636

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• add README note about multiple index files

  bingmann

  committed
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• travis: re-enable coveralls

  bingmann

  committed
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• query: add 32-bit SSE expansion addition

  bingmann

  committed
  b8d9d88

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• travis: build python in different directory

  bingmann

  committed
  5cab9b5

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• add badges for travis and coveralls to README.md

  bingmann

  committed
  e644768

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• enable coverage upload to coveralls.io

  bingmann

  committed
  573d2c0

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• query: enable 8-bit/16-bit/32-bit score arrays for larger queries

  bingmann

  committed
  05588df

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• cmake: add gcov/lcov coverage option

  bingmann

  committed
  597f73c

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• python: add SearchResult class

  bingmann

  committed
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Commits on Aug 12, 2020

• query: re-add fast path in counts_to_result() for single index case

  bingmann

  committed
  ec206c1

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• query: change search result to cobs::SearchResult

  bingmann

  committed
  4685ad8

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• delete addressable_priority_queue (unused)

  bingmann

  committed
  671ebdf

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• query: refactor code, more private functions

  bingmann

  committed
  054acd8

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• query: enable searching of multiple index files (first draft)

  bingmann

  committed
  9b32442

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• canonicalize_kmer() now does not add a terminating zero.

  bingmann

  committed
  3b0e1f9

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• WARN: cobs only warns now on invalid base pair letters (!= ACGT).

  bingmann

  committed
  c79d3ab

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• canonicalize_kmer() now maps invalid letters to zero, always!

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  bingmann

  committed
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Commits on Aug 5, 2020

• DIE if canonicalize_kmer() encounters letters other than ACGT.

  bingmann

  committed
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• README: adding info about file type and how they are parsed.

  bingmann

  committed
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• update README with .list file list info, update usage help.

  bingmann

  committed
  7909429

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• removing "ranfold_index" which was never completed

  bingmann

  committed
  de99760

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• add "list" to --file-type to allow override from command line

  bingmann

  committed
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• enable loading of .list file lists, allow relative or absolute paths

  bingmann

  committed
  81e52e1

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Commits on Mar 18, 2020

• file: remove initializing constructors, use direct named access

  bingmann

  committed
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Commits on Mar 17, 2020

• file: less getters/setters for file header variables

  bingmann

  committed
  29a1ef1

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• fix CMAKE_EXECUTABLE_SUFFIX which defaults to OFF

  bingmann

  committed
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