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Commits on Dec 16, 2016

• Merge branch 'no/null/keywords/167'

  eparejatobes

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• add a note about isoforms

  eparejatobes

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• remove NULL UniProt keyword category

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• Merge branch 'pr/165'

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• import Optional in NCBI taxonomy, as is part of a signature

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Commits on Dec 15, 2016

• Fixed java.util.Array reference

  laughedelic

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• Updated sbt plugin

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• Addressed @eparejatobes comments: removed toString; changed back enum name to plural

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• Implemented model described in https://github.com/bio4j/bio4j/pull/165#issuecomment-259957383

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Commits on Oct 17, 2016

• Merge pull request #166 from bio4j/codacy/badge-link-fix

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• Fixed Codacy badge link

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• Changed names of the TaxonomicRank enum values to camel-case (for the Class value); renamed long value to UNKNOWN; added toString and fromString conversions

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• Renamed taxonomicRank property to just rank; made TaxonomicRanks enum name singular

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Commits on Oct 15, 2016

• Merge branch 'update/angulillos/164'

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• update to angulillos 0.9.1, remove jdom dependency

  eparejatobes

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• Merge branch 'update/build/163'

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• add jenkins resolver to build plugins

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• update build plugin to 0.8.0-RC3

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Commits on Oct 14, 2016

• Merge branch 'bug/uniprot/keyword/types/162'

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• add NULL as UniProt keyword category

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Commits on Oct 5, 2016

• Merge branch 'review/enzyme/160'

  eparejatobes

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• make Enzyme comments value String

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• make catalytic activity value String

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• make edges for Enzyme subclasses have plural name

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• add indexed IDs for all Enzyme subclasses

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Commits on Oct 3, 2016

• Merge branch 'review/taxonomy/159'

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• add moar taxonomic ranks

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• links to general docs for NCBI taxonomy

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• update NCBI taxonomy, docs

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• Merge branch 'feature/generic/code/crossrefs/129'

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• update LinkEdge to GenericEdge

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• Merge branch 'feature/generic/code/crossrefs/129' of github.com:bio4j/bio4j into feature/generic/code/crossrefs/129

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• Merge branch 'master' into feature/generic/code/crossrefs/129

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• Merge branch 'uniprot/enzyme/annotations/157'

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Commits on Oct 2, 2016

• Updated to the latest angulillos with generic edges; removed old cross-reference code

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