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base repository: cBioPortal/cbioportal
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base: v6.2.1
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head repository: cBioPortal/cbioportal
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compare: v6.2.2
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  • 20 commits
  • 1,047 files changed
  • 10 contributors

Commits on May 1, 2025

  1. Prepare for v6.2.2

    zainasir authored May 1, 2025
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Commits on May 2, 2025

  1. Use BIGINT primary key for clinical_event table (#11399)

    * Use BIGINT primary key for clinical_event table
    
    * Respond to PR feedback
    
    * Update cgds files in src/test/resources in response to Gaofei's feedback
    jamesqo authored May 2, 2025
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  2. Make the "fetchGenericAssayData()" method more robust against possibl…

    …e NPEs (#11504)
    
    * Make the "fetchGenericAssayData()" method more robust against possible NullPointerExceptions
    
    * Commit the suggestion from dippindots
    
    Co-authored-by: Gaofei Zhao <[email protected]>
    
    ---------
    
    Co-authored-by: Gaofei Zhao <[email protected]>
    KingAlex1985 and dippindots authored May 2, 2025
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Commits on May 5, 2025

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Commits on May 6, 2025

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Commits on May 7, 2025

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Commits on May 8, 2025

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  2. correct the DROP table statement order (#11444)

    - add reminder to maintain reverse order of CREATE statements
    - standardize whitespace to mysqldump format
    sheridancbio authored May 8, 2025
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  3. Add Java style formatter (Google Style)

    Fix #11380.
    
    - Format code repository with spotless
    - add pre-commit hook to format on commit
    - use googleJavaFormat
    teesamuel authored and inodb committed May 8, 2025
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  4. Run spotless:apply formatter

    If you want to rebase follow description in PR
    
    Co-authored-by: teesamuel <[email protected]>
    inodb and teesamuel committed May 8, 2025
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  5. Merge pull request #11406 from teesamuel/java_style_formatter

    Java style formatter
    inodb authored May 8, 2025
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Commits on May 10, 2025

  1. Add schema versioning for derived tables (#11446)

    - derived_table.version is reported by info api
    - derived_table.version pom value should match db table info value (for backend function)
    - derived_table.version does not affect importers currently (importers
      only import into MySQL, not clickhouse)
    
    Co-authored-by: Gaofei Zhao <[email protected]>
    sheridancbio and dippindots authored May 10, 2025
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Commits on May 12, 2025

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  2. fix label-check ci workflow

    label-check did not properly handle labels with spaces (such as
    'includes db changes'). This changes constructs a bash array to
    hold the various label strings applied to the PR, and iterates
    through that array and the available_lables array with indexing.
    sheridancbio committed May 12, 2025
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  3. Merge pull request #11536 from dippindots/add-resources-column

    - Add CUSTOM_METADATA column into resource_definition table
    - Fix label-check.yml, this test was not able to recognize labels with more than one words
    dippindots authored May 12, 2025
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  5. Frontend v6.2.2

    zainasir authored May 12, 2025
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