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base repository: cBioPortal/cbioportal
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base: v6.3.6
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head repository: cBioPortal/cbioportal
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compare: v6.3.7
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  • 11 commits
  • 34 files changed
  • 10 contributors

Commits on Sep 2, 2025

  1. Prepare for v6.3.7

    zainasir authored Sep 2, 2025
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Commits on Sep 4, 2025

  1. Update cache key generation logic in CustomKeyGenerator (#11686)

    Remove study-specific cache key logic because it is taking a horrible toll on caching behavior
    alisman authored Sep 4, 2025
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Commits on Sep 5, 2025

  1. Delete long cache key test for CustomKeyGeneratorTest (#11697)

    * Delete long cache key test for CustomKeyGeneratorTest
    
    * Get rid of unnecessary stubbing
    
    ---------
    
    Co-authored-by: alisman <[email protected]>
    dippindots and alisman authored Sep 5, 2025
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  3. Update Architecture-Overview.md with corrected links (#11675)

    * Update Architecture-Overview.md with corrected links
    
    * Fix validator link to current path
    
    * Update API reference link
    
    * Add missing frontend link to match other sections
    
    * Update API reference link in Architecture-Overview.md
    
    * Update API reference link
    chiang-sh authored Sep 5, 2025
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Commits on Sep 8, 2025

  1. Add posibility to create and drop published virtual studies with cust…

    …om IDs (#11611)
    
    * Create/drop published virtual studies with custom IDs
    
    To support RFC96 Virtual Study Authorisation Model we need static human
    readable ids to assign permissions to them
    
    Fix REST template delete call
    
    The delete method on RestTemplate does not accept an HttpEntity parameter for headers.
    We should use exchange(url, HttpMethod.DELETE, new HttpEntity<>(getHttpHeaders()), Void.class) to correctly include headers in the DELETE request.
    
    Improve readability of publishVirtualStudy method
    
    The parameter virtualStudyData is reassigned inside the method, shadowing the method parameter.
    We started using a separate local variable to avoid confusion and improve readability.
    
    Change createVirtualStudy method to return nothing
    
    SonarQube suggested this change
    
    Make study id duplication errors clearer to user
    
    Add e2e for testing vs publishing/unpublishing
    
    Select better names for virtual study methods
    
    * Clean drop public VS method code
    
    - make it more cleare that we remove VS with the same id we pass to the
      method
    - improve method name. Make it more explicit that removal happens by id
    
    * Test creating public VS with custom id and droping it
    
    * Specify json content type for VS custom id e2e test
    forus authored Sep 8, 2025
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Commits on Sep 11, 2025

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Commits on Sep 19, 2025

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Commits on Sep 22, 2025

  1. fix high security vulnerabilities (#11717)

    Co-authored-by: Bryan Lai <[email protected]>
    gblaih and Bryan Lai authored Sep 22, 2025
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Commits on Sep 26, 2025

  1. Refactor Clickhouse enrichments endpoint to avoid redundant counting …

    …of profiling status for genes which are covered by the same panels
    alisman authored Sep 26, 2025
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Commits on Oct 6, 2025

  1. Frontend v6.3.7

    github-actions committed Oct 6, 2025
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