Thanks to visit codestin.com
Credit goes to github.com

Skip to content

Difficult to understand documentation with regard to sqlite databases #2

@allaway

Description

@allaway

I am trying to annotate some variants using the exac_03 database. I retrieved it using download.database(), but it retrieved the following database: hg19_exac03.sqlite.sql. It's now in my "annovar/humandb" directory.

When I try x <- annotation(dat = dat, anno.name = "exac03", database.dir = "annovar/humandb", db.type = "sqlite")
I get the following error:

Error in dbname.initial(anno.name, dbname.fixed, setdb.fun, buildver,  : 
  annovar/humandb/hg19_exac03.sqlite sqlite format database dose not exist.

Is there a step I am missing between retrieving the db and running annotation? Thanks!

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions