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Commits on Sep 23, 2021

• Diamond (#710)

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  spficklin

  and

  drpatelh

  authored
  ca53f75

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Commits on Sep 22, 2021

• Add glnexus (#729)

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  ramprasadn

  and

  drpatelh

  authored
  25943a4

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• Unzip update (#730)

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  jfy133

  authored
  5758e9f

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Commits on Sep 21, 2021

• Add module `kleborate` (#711)

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  3 peopleauthored
  77a2895

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• Update agrvate to latest version (#728)

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  rpetit3

  and

  drpatelh

  authored
  8e9d6cd

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• module fastani (#695)

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  abhi18av

  and

  drpatelh

  authored
  0d53a34

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• add: MALTEXTRACT (#725)

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  3 peopleauthored
  7830a4a

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• Refactor cat/cat module (#723)

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  drpatelh

  authored
  1d6f47c

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Commits on Sep 20, 2021

• CAT CAT (#722)

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  3 peopleauthored
  b32c46c

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• Update pangolin to 3.1.11 (#721)

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  heuermh

  authored
  60d8bd7

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• Typo fix

  jfy133

  authored
  4f0b02b

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• Module docs transfer - point people to website! (#720)

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  jfy133

  and

  drpatelh

  authored
  3a0cd9d

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• Module to map reads with BBMap (#717)

  erikrikarddaniel

  authored
  97b803a

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Commits on Sep 17, 2021

• Update for mutect2: add output channel for stats file (#716)

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  3 peopleauthored
  3c4eaec

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Commits on Sep 16, 2021

• Add PyDamage filter (#713)

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  maxibor

  and

  jfy133

  authored
  7e45cbf

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• Add pydamage analyze module (#705)

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  maxibor

  and

  jfy133

  authored
  d9dfbe9

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• new module: pbccs (#688)

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  sguizard

  and

  jfy133

  authored
  bbf268c

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• module for `agrvate` (#693)

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  abhi18av

  and

  drpatelh

  authored
  1840289

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• Chromap patch (#712)

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  mahesh-panchal

  authored
  e904107

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Commits on Sep 15, 2021

• Fix bug in gffread (#686)

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  jfnavarro

  and

  drpatelh

  authored
  e9c5708

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• Fix kallistobustools version extraction (#691)

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  fbdtemme

  and

  drpatelh

  authored
  f4ec33e

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• add staphopia-sccmec module (#702)

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  rpetit3

  and

  drpatelh

  authored
  073bbf1

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• Chromap Module (#659)

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  11 peopleauthored
  58134cb

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• update: MALT build version bump (#699)

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  jfy133

  and

  drpatelh

  authored
  561f16f

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• Update: MALT_RUN (#706)

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  jfy133

  and

  drpatelh

  authored
  26fc617

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• module: snp-dists (#697)

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  abhi18av

  and

  drpatelh

  authored
  1bc3f6c

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• Get rid of meta map from bbmap/index (#700)

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  erikrikarddaniel

  authored
  3a8bfc1

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• modify markduplicates module (#681)

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  projectoriented

  authored
  b2a6f54

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• Add module: bamaligncleaner (#676)

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  jfy133

  authored
  c485109

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Commits on Sep 14, 2021

• Add bcftools/query module (#670)

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  abhi18av

  authored
  6ff995e

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• Adding plink/vcf module (#656)

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  Mxrcon

  and

  abhi18av

  authored
  59ca744

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Commits on Sep 13, 2021

• Mutect2 (#682)

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  3 peopleauthored
  bd68797

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• Getpileupsummaries (#689)

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  3 peopleauthored
  1023a98

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Commits on Sep 12, 2021

• Add bcftools/view module (#669)

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  abhi18av

  authored
  c5634ba

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Commits on Sep 9, 2021

• Update the commands in the Using existing modules section (#698)

  kojix2

  authored
  1c14be8

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