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Commits on Nov 30, 2023

• Updated mzParser native reader to recognize and read mzMLb files. RAMP isn't necessary.

  

  mhoopmann

  committed
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• Made changes to improve mzML data converted from TIMSTOF. Because different converters use different conventions when declaring data contain ion mobility (whether identified prior to the ion mobili…

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  mhoopmann

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Commits on Nov 9, 2023

• Added ion mobility information from Agilent instruments.

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  mhoopmann

  committed
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Commits on Nov 7, 2023

• Expanded IMS support (for TimsTOF data, at least) to propagate up to MSToolkit::Spectrum objects.

  

  mhoopmann

  committed
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Commits on Oct 24, 2023

• Updated mzMLb support to follow recent changes migrating userParams to cvParams.

  

  mhoopmann

  committed
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Commits on Oct 16, 2023

• Merge branch 'master' of https://github.com/mhoopmann/mstoolkit

  

  mhoopmann

  committed
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• Update raw file reading to produce a nativeID (scan=####). Updated mzIMLTools to correctly process mzIdentML from Thermo raw and mzMLb files.

  

  mhoopmann

  committed
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Commits on Sep 28, 2023

• Update README.md

  

  Michael Hoopmann

  authored
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• Updating version number

  

  mhoopmann

  committed
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• Updated Makefile for Linux builds. Has an option to support HDF5, if contained on the host computer. Probably works for static libraries. Not so sure for the other libraries.

  

  mhoopmann

  committed
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Commits on Sep 27, 2023

• Major changes:

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  mhoopmann

  committed
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Commits on Sep 6, 2023

• Added better MSX processing interface.

  

  mhoopmann

  committed
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Commits on Apr 4, 2023

• Merge pull request #21 from jke000/master

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  Michael Hoopmann

  authored
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Commits on Mar 30, 2023

• generate index offset on the fly if scan index is missing for mzML/mzXML files

  jke000

  committed
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Commits on Mar 15, 2023

• Fix buffer overrun reported by Jimmy when parsing filenames and extensions from really large files. Also added in David's support for Bruker IonMobility and read buffering. Some additional code cle…

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  mhoopmann

  committed
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Commits on Feb 23, 2023

• Undoing changes made in MSSingleScan for testing purposes. Reverts this application back to normal behavior.

  

  mhoopmann

  committed
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• Added Luis's fix for identifying spectra by an index number instead of a scan number.

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  mhoopmann

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Commits on Sep 14, 2022

• Fix MGF parser to properly parse TITLE lines that have delimiters in them.

  

  mhoopmann

  committed
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Commits on Aug 5, 2022

• Updates to MGF files to handle cases where multiple raw files were combined in Distiller.

  

  mhoopmann

  committed
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Commits on Jul 1, 2022

• Complete rewrite of MGF parser. Should be more extensible than before. Probably still needs development.

  

  mhoopmann

  committed
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Commits on Mar 22, 2022

• Adding iTRAQ8plex modification identifier.

  

  mhoopmann

  committed
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• Update version number again.

  

  mhoopmann

  committed
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Commits on Mar 21, 2022

• including math.h for linux builds.

  

  mhoopmann

  committed
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• Updating mzIMLTools headers, including incrementing the version number.

  

  mhoopmann

  committed
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• Smarter handling of modifications in mzIMLTools:

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  mhoopmann

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Commits on Mar 14, 2022

• Fix recasting warnings.

  

  mhoopmann

  committed
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• Updates to mzIMLTools, for much faster element lookup and cross-referencing.

  

  mhoopmann

  committed
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Commits on Jun 22, 2021

• Various updates that have languished. Some improvements to mzIMLTools, and perhaps some linebreak changes elsewhere.

  

  mhoopmann

  committed
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Commits on Jan 21, 2021

• Handling all forms of MSnumpress+zlib now.

  

  mhoopmann

  committed
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Commits on Jan 12, 2021

• Adding new MS/MS type.

  

  mhoopmann

  committed
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Commits on Oct 13, 2020

• Updating function headers to use const char arrays.

  

  mhoopmann

  committed
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Commits on Oct 6, 2020

• Merge branch 'master' of https://github.com/mhoopmann/mstoolkit

  

  mhoopmann

  committed
  d53a8f8

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• Fixed bug in exporting mzID from searches of MGF files.

  

  mhoopmann

  committed
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Commits on Sep 17, 2020

• Update README.md

  

  Michael Hoopmann

  authored
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• Small mzID bugfix.

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  mhoopmann

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