Hi! I just first wanted to say thank you so much for developing this package. It is quite handy and overall greta resource for so many. I've been using the blasts comparison to confirm some previous classification for grouping a protein family. So far it has worked wonderfully. Though for one fasta file, I ran into the follow:

Rhodo_T1_T2 <- as.data.frame(orthologr::blast(query_file = '~/Documents/Mining_MAMPs/Mining_Known_MAMPs/Analyses/Catagorizing_CSPs/CSP_types/Typing_fasta_files/Rhodococcus_Type1.fasta', subject_file = '~/Documents/Mining_MAMPs/Mining_Known_MAMPs/Analyses/Catagorizing_CSPs/CSP_types/Typing_fasta_files/Rhodococcus_Type2.fasta', seq_type = 'protein'))

Running blastp: 2.11.0+ ...

Building a new DB, current time: 06/16/2023 17:03:59
New DB name: /tmp/RtmpvS42vk/_blast_db/blastdb_Rhodococcus_Type2.fasta_protein.fasta
New DB title: blastdb_Rhodococcus_Type2.fasta_protein.fasta
Sequence type: Protein
Deleted existing Protein BLAST database named /tmp/RtmpvS42vk/_blast_db/blastdb_Rhodococcus_Type2.fasta_protein.fasta
Keep MBits: T
Maximum file size: 1000000000B
Adding sequences from FASTA; added 5 sequences in 0.000640154 seconds.

Error in h(simpleError(msg, call)) :
error in evaluating the argument 'x' in selecting a method for function 'as.data.frame': File blastresult_Rhodococcus_Type1.fasta.csv could not be read correctly. Please check the correct path to blastresult_Rhodococcus_Type1.fasta.csv or whether BLAST did write the resulting hit table correctly.

Type1 fast file is fine when comparing against itself or the other two types. Type 2 errors against Type1 and Type3 but runs ok comparing against itself. I've tried reuploading the fasta files but that did nothing. Any ideas? Thanks in advance!