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Commits on May 2, 2021

• New last/lastdb module to index sequences before alignment. (#476)

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  charles-plessy

  and

  drpatelh

  authored
  16d20a7

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Commits on Apr 30, 2021

• Update README to include some git best practices (#415)

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  antunderwood

  authored
  f943363

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• Fixes for nanoseq modules (#479)

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  drpatelh

  authored
  466ab67

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• add qcat module (from nanoseq modules) (#469)

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  yuukiiwa

  authored
  05f479f

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• add bedtools bamtobed module (from nanoseq modules) (#466)

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  yuukiiwa

  authored
  3f804ee

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• add graphmap index and align modules (from nanoseq modules) (#468)

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  yuukiiwa

  authored
  a872046

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• add minimap2 index module (#467)

  yuukiiwa

  authored
  05b067e

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• Bugfix (#477)

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  KevinMenden

  and

  drpatelh

  authored
  bbf8626

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• Added kallistobustools/count (#409)

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  FloWuenne

  and

  KevinMenden

  authored
  88dda73

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Commits on Apr 29, 2021

• Raxmlng (#474)

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  antunderwood

  authored
  6a31737

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Commits on Apr 28, 2021

• Add gvcf index files (#472)

  FriederikeHanssen

  authored
  9ce4427

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• raxml-ng is compute intensive - upgrade process label to high (#473)

  antunderwood

  authored
  9b0aa3e

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• Update kallistobustools/ref module (#465)

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  FloWuenne

  and

  KevinMenden

  authored
  a5d0cf3

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• New module to use hmmalign from HMMER to align sequences (#470)

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  erikrikarddaniel

  and

  drpatelh

  authored
  d7a3286

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Commits on Apr 27, 2021

• Add artic guppyplex (#455)

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  JoseEspinosa

  authored
  d63ff4b

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Commits on Apr 26, 2021

• feat: remove social preview image to use GitHub OpenGraph (#461)

  maxulysse

  authored
  789a799

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• Bump plasmidid version (#460)

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  drpatelh

  authored
  9ea7f50

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Commits on Apr 19, 2021

• Add human data paths (#458)

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  FriederikeHanssen

  and

  drpatelh

  authored
  ae154b8

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Commits on Apr 16, 2021

• change process.time for tests to 2h (#452)

  KevinMenden

  authored
  f7e3b82

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• Update modules required for rnaseq pipeline (#449)

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  drpatelh

  authored
  d1c6082

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Commits on Apr 15, 2021

• Add ucsc/bedclip module (#450)

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  drpatelh

  authored
  defaca4

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• minor typo (#451)

  antunderwood

  authored
  e2d64bd

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• Fixing abacas meta.yml file (#447)

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  JoseEspinosa

  authored
  1e033bb

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Commits on Apr 14, 2021

• Raxmlng (#443)

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  3 peopleauthored
  2ed9b6a

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Commits on Apr 13, 2021

• Finish deeptools modules (#442)

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  JoseEspinosa

  and

  drpatelh

  authored
  750bd8c

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• remove deprecated test tags (#440)

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  KevinMenden

  authored
  043a7d1

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• Move assembly test files from genome to illumina (#441)

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  JoseEspinosa

  and

  drpatelh

  authored
  a9fcbd9

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• FIx plasmidid tests for new contigs.fasta file (#438)

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  JoseEspinosa

  authored
  26fdebc

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• Finish rseqc modules (#439)

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  KevinMenden

  and

  drpatelh

  authored
  1d874bb

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Commits on Apr 12, 2021

• 🧸 Updated rasusa (#437)

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  thanhleviet

  authored
  c736817

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• Add kraken2 pigz multi-tool container for compressing output fastq files (#434)

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  drpatelh

  authored
  c99ab09

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• Iqtree (#435)

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  antunderwood

  and

  drpatelh

  authored
  df8910d

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• Add abacas module (#431)

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  JoseEspinosa

  and

  drpatelh

  authored
  3ac21ff

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• Move test data to nf-core/test-datasets (#432)

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  KevinMenden

  and

  drpatelh

  authored
  0b402ff

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• Add pycoqc module (#424)

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  JoseEspinosa

  authored
  2c43c39

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