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Commits on Oct 16, 2025

• tests: fix actions/upload-artifact@v1 removed

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• tests: fix mambaforge installer doesn't exist anymore

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Commits on May 15, 2025

• feat(config): also show resource_limits and overrides as props

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• feat(yaml): add !clear tag to clear lists

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• feat(config): expose userdata and directories configs

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• feat(cli/show): improve listing ymp show options

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Commits on May 13, 2025

• fix(reference): better message when reference not found

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• chore: update environment.yaml

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• feat(rseqqc): add qc_rseqc

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• fix(util): more tinkering on check_input()...

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• feat(resources): add bed type

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• feat(bbmap): expose trimpolya and forcetrimright in trim_bbmap

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• feat: forward --scheduler option als from subcmd make

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Commits on Jul 19, 2024

• fix(snakemake): add rerun-trigger and default to mtime

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• Add manual upload button to release workflow

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• random change to re-trigger actions...?

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• CI: fix typo

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  dc8c787

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• CI: update release workflow

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Commits on Jul 17, 2024

• CI fix

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• Update workflow and setup.py

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• Update workflow and setup.py

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• Update release workflow

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Commits on Jul 16, 2024

• Release build fixes

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• Merge pull request #162 from epruesse/development

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• Pin Snakemake

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• Update environment.yaml

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Commits on Dec 12, 2023

• feat(cli/env-list): allow writing as CSV (machine readable)

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• feat(cli/env-list): allow showing more fields; black

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• fix(cli/env-list): remove unimplemented options

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• feat(cli/env-list): allow filtering installed/not-installed

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Commits on Dec 11, 2023

• fix(blast): bug in new checkpoint usage

  epruesse

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• fix(util/check_input): handle file error

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• chore(conda): adjust environment.yaml pkg versions

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Commits on Nov 6, 2023

• Add missing file

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Commits on Oct 18, 2023

• feat(snakemake): match version 7.32 (InOutput)

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