Package: grandR
Version: 0.2.6
Title: Comprehensive Analysis of Nucleotide Conversion Sequencing Data
Authors@R: c(
    person("Florian", "Erhard", email = "Florian.Erhard@informatik.uni-regensburg.de", role = c("aut", "cre"), comment = c(ORCID = "0000-0002-3574-6983")),
    person("Teresa", "Rummel", email = "Teresa.Rummel@uni-wuerzburg.de", role = "ctb"),
    person("Lygeri", "Sakellaridi", email = "Lygeri.Sakellaridi@uni-wuerzburg.de", role = "ctb"),
    person("Kevin", "Berg", email = "Kevin.Berg@uni-wuerzburg.de", role = "ctb")
    )
Description: Nucleotide conversion sequencing experiments have been
  developed to add a temporal dimension to RNA-seq and single-cell RNA-seq. Such 
  experiments require specialized tools for primary processing such as GRAND-SLAM,
  (see 'Jürges et al' <doi:10.1093/bioinformatics/bty256>) and specialized tools for 
  downstream analyses. 'grandR' provides a comprehensive toolbox for quality control,
  kinetic modeling, differential gene expression analysis and visualization of such data.
Author: Florian Erhard [aut, cre] (<https://orcid.org/0000-0002-3574-6983>),
  Teresa Rummel [ctb],
  Lygeri Sakellaridi [ctb],
  Kevin Berg [ctb]
Maintainer: Florian Erhard <Florian.Erhard@informatik.uni-regensburg.de>
License: Apache License (>= 2)
Encoding: UTF-8
URL: https://github.com/erhard-lab/grandR
BugReports: https://github.com/erhard-lab/grandR/issues
Depends: R (>= 3.5.0)
Imports: stats,
    Matrix,
    rlang,
    ggplot2,
    grDevices,
    patchwork,
    RCurl,
    plyr,
    parallel,
    reshape2,
    MASS,
    scales,
    cowplot,
    minpack.lm,
    lfc,
    labeling,
    methods,
    utils,
    numDeriv
Suggests: knitr,
    rmarkdown,
    circlize,
    Seurat,
    ComplexHeatmap,
    ggrepel,
    DESeq2,
    S4Vectors,
    data.table,
    clusterProfiler,
    biomaRt,
    msigdbr,
    fgsea,
    rclipboard,
    cubature,
    DT,
    shinyjs,
    shinyjqui,
    RColorBrewer,
    gsl,
    htmltools,
    matrixStats,
    monocle,
    VGAM,
    quantreg,
    graphics,
    shiny,
    ggrastr,
    viridisLite,
    deSolve
RoxygenNote: 7.3.2
VignetteBuilder: knitr
