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Commits on Feb 28, 2024

• Merge pull request #33 from mvdbeek/use_released_ephemeris_version

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• Remove Kraken2/Braken test build

  natefoo

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• Undo danRer11

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• Merge pull request #39 from galaxyproject/jennaj-danRer11

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• Update genomes.yml

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Commits on Feb 5, 2024

• Include conditional ...

  mvdbeek

  committed
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• Run journalctl as a user with permissions

  natefoo

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• Cores/mem for kraken2

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• Save gunicorn logs on teardown

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• Add bracken and kraken2 dm entries

  mvdbeek

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• Refactor updating tool_data_table_conf.xml so that it runs for remote

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Commits on Feb 4, 2024

• Add kraken2 & bracken_databases tool data table config entries

  mvdbeek

  committed
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• Add missing lastz_seqs table for twobit

  

  natefoo

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  mvdbeek

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Commits on Feb 2, 2024

• Update tailscale_authkey

  natefoo

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• Quote item.id

  

  mvdbeek

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  natefoo

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• Make parameters explicit in data_managers.yml

  

  mvdbeek

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  natefoo

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• Attempt to generate bracken data

  

  mvdbeek

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  natefoo

  committed
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• Use ephemeris release version

  

  mvdbeek

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  natefoo

  committed
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• Merge pull request #32 from galaxyproject/ci-fixes

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• Update slurm-drmaa to EL9 rpm

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• Convert compound command groups to if/then/else/fi to avoid suppressing

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Commits on Oct 12, 2023

• Properly set up ssh control, don't log popd output in trap

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Commits on Oct 11, 2023

• Merge pull request #26 from galaxyproject/genome-danRer10

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• Drop bowtie from builder list

  natefoo

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• Remove debugging and unused stuff

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Commits on Oct 6, 2023

• Make $EPHEMERIS_BIN absolute

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• Correct var name

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• Update tailscale auth key

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• Merge branch 'remote-import' into genome-danRer10

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• Set $TMPDIR when importing

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Commits on Oct 3, 2023

• Missed one

  natefoo

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• PRoperly separate local and remote workdirs, use a remote temp dir with

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• Pin urllib3 in galaxy-maintenance-scripts

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Commits on Oct 2, 2023

• Correct path explosion

  natefoo

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• remote API key

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