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Commits on May 6, 2020

• Bump version to 1.5.2

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Commits on Dec 13, 2016

• SAM::record: add methods to set the flag and add a tag

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Commits on Aug 26, 2016

• Bump version to 1.5.1.

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• Remove deprecated use of Test::Class::Moose runtests.

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Commits on Feb 25, 2016

• Merge branch 'develop' of github.com:genoo/GenOO into develop

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  Panagiotis Alexiou

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• fix to keep only valid GTF input lines for GeneCollection creation

  

  Panagiotis Alexiou

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Commits on Sep 30, 2015

• Update README.md with travis badges and more info

  mnsmar

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• Bump version to 1.5.0

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  b076baa

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• Update CHANGES.md

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  8df69c0

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• A few more travis customizations

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  085087c

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• Fix .travis.yml for integration with Dist::Zilla

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• Add .travis.yml for Travis CI integration

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Commits on Sep 18, 2015

• Skip genes whose transcripts do not overlap

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Commits on Jun 22, 2015

• Fix _build_intronic_regions to return ArrayRef

  mnsmar

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Commits on Jun 19, 2015

• New method to get intronic length for gene

  mnsmar

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• New method to get intronic regions from gene

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Commits on Jun 2, 2015

• Rephrase deprecation warnings to be more accurate

  mnsmar

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Commits on May 21, 2015

• Merge pull request #9 from genoo/develop

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  Panagiotis Alexiou

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  b7a1e6b

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• Optimize foreach_contained_record_do

  mnsmar

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• Change remote in dist.ini to point to origin

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• Fix overlap vs contain in RegionCollection

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Commits on May 18, 2015

• Bump version to 1.4.9

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• Fix gene GTF creation. Link transcript to gene.

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Commits on May 12, 2015

• Bump version to 1.4.8

  mnsmar

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• Fix gene creation from GTF

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Commits on May 7, 2015

• Fix cds coords for transcript creation from GTF.

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Commits on May 6, 2015

• Merge branch 'develop' of github.com:mnsmar/GenOO into develop

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Commits on Mar 18, 2015

• Bump version to 1.4.7

  mnsmar

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• Fix FASTA parser for empty input file

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Commits on Mar 6, 2015

• Bug Fix: FASTQ parser clear carriage return character

  

  Panagiotis Alexiou

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Commits on Feb 26, 2015

• SAM record tags bug fix

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  Panagiotis Alexiou

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Commits on Feb 16, 2015

• Merge branch 'master' of github.com:mnsmar/GenOO into develop

  

  Panagiotis Alexiou

  committed
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• GeneCollection GTF can take STDIN input

  

  Panagiotis Alexiou

  committed
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Commits on Feb 12, 2015

• Bump version to 1.4.6

  mnsmar

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• Merge branch 'develop'

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