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outside-divaErrors probably linked to issue somewhere elseErrors probably linked to issue somewhere else
Description
Issue to get the metadata from the Vocab server.
Julia version
1.8.3
Packages
(@v1.8) pkg> st
Status `~/.julia/environments/v1.8/Project.toml`
[efc8151c] DIVAnd v2.7.9
⌃ [864edb3b] DataStructures v0.17.20
[5789e2e9] FileIO v1.16.0
[61d90e0f] GeoJSON v0.6.2
[c27321d9] Glob v1.3.0
⌅ [cd3eb016] HTTP v0.8.19
[7073ff75] IJulia v1.23.3
[033835bb] JLD2 v0.4.28
[682c06a0] JSON v0.21.3
⌃ [85f8d34a] NCDatasets v0.10.4
[3725be50] PhysOcean v0.6.6
⌃ [c3e4b0f8] Pluto v0.14.7
[647866c9] PolygonOps v0.1.2
[438e738f] PyCall v1.94.1
[d330b81b] PyPlot v2.11.0
[2913bbd2] StatsBase v0.33.21
Error message
WARNING: both IOExtras and Base export "closewrite"; uses of it in module StreamRequest must be qualified
WARNING: both IOExtras and Base export "closewrite"; uses of it in module ConnectionPool must be qualified
DIVAnd: Error During Test at /home/ctroupin/.julia/packages/DIVAnd/MV3j9/test/runtests.jl:12
Got exception outside of a @test
LoadError: UndefVarError: closewrite not defined
Stacktrace:
[1] request(::Type{HTTP.StreamRequest.StreamLayer{Union{}}}, io::HTTP.ConnectionPool.Transaction{Sockets.TCPSocket}, req::HTTP.Messages.Request, body::Vector{UInt8}; reached_redirect_limit::Bool, response_stream::Nothing, iofunction::Nothing, verbose::Int64, kw::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ HTTP.StreamRequest ~/.julia/packages/HTTP/IAI92/src/StreamRequest.jl:83
[2] request(::Type{HTTP.ConnectionRequest.ConnectionPoolLayer{HTTP.StreamRequest.StreamLayer{Union{}}}}, url::HTTP.URIs.URI, req::HTTP.Messages.Request, body::Vector{UInt8}; proxy::Nothing, socket_type::Type, reuse_limit::Int64, kw::Base.Pairs{Symbol, Union{Nothing, Bool}, Tuple{Symbol, Symbol}, NamedTuple{(:iofunction, :reached_redirect_limit), Tuple{Nothing, Bool}}})
@ HTTP.ConnectionRequest ~/.julia/packages/HTTP/IAI92/src/ConnectionRequest.jl:96
[3] request(::Type{HTTP.ExceptionRequest.ExceptionLayer{HTTP.ConnectionRequest.ConnectionPoolLayer{HTTP.StreamRequest.StreamLayer{Union{}}}}}, ::HTTP.URIs.URI, ::Vararg{Any}; kw::Base.Pairs{Symbol, Union{Nothing, Bool}, Tuple{Symbol, Symbol}, NamedTuple{(:iofunction, :reached_redirect_limit), Tuple{Nothing, Bool}}})
@ HTTP.ExceptionRequest ~/.julia/packages/HTTP/IAI92/src/ExceptionRequest.jl:19
[4] (::Base.var"#88#90"{Base.var"#88#89#91"{ExponentialBackOff, HTTP.RetryRequest.var"#2#3"{Bool, HTTP.Messages.Request}, typeof(HTTP.request)}})(::Type, ::Vararg{Any}; kwargs::Base.Pairs{Symbol, Union{Nothing, Bool}, Tuple{Symbol, Symbol}, NamedTuple{(:iofunction, :reached_redirect_limit), Tuple{Nothing, Bool}}})
@ Base ./error.jl:296
[5] #request#1
@ ~/.julia/packages/HTTP/IAI92/src/RetryRequest.jl:44 [inlined]
[6] request(::Type{HTTP.MessageRequest.MessageLayer{HTTP.RetryRequest.RetryLayer{HTTP.ExceptionRequest.ExceptionLayer{HTTP.ConnectionRequest.ConnectionPoolLayer{HTTP.StreamRequest.StreamLayer{Union{}}}}}}}, method::String, url::HTTP.URIs.URI, headers::Vector{Pair{SubString{String}, SubString{String}}}, body::Vector{UInt8}; http_version::VersionNumber, target::String, parent::Nothing, iofunction::Nothing, kw::Base.Pairs{Symbol, Bool, Tuple{Symbol}, NamedTuple{(:reached_redirect_limit,), Tuple{Bool}}})
@ HTTP.MessageRequest ~/.julia/packages/HTTP/IAI92/src/MessageRequest.jl:51
[7] request(::Type{HTTP.BasicAuthRequest.BasicAuthLayer{HTTP.MessageRequest.MessageLayer{HTTP.RetryRequest.RetryLayer{HTTP.ExceptionRequest.ExceptionLayer{HTTP.ConnectionRequest.ConnectionPoolLayer{HTTP.StreamRequest.StreamLayer{Union{}}}}}}}}, method::String, url::HTTP.URIs.URI, headers::Vector{Pair{SubString{String}, SubString{String}}}, body::Vector{UInt8}; kw::Base.Pairs{Symbol, Bool, Tuple{Symbol}, NamedTuple{(:reached_redirect_limit,), Tuple{Bool}}})
@ HTTP.BasicAuthRequest ~/.julia/packages/HTTP/IAI92/src/BasicAuthRequest.jl:28
[8] request(::Type{HTTP.RedirectRequest.RedirectLayer{HTTP.BasicAuthRequest.BasicAuthLayer{HTTP.MessageRequest.MessageLayer{HTTP.RetryRequest.RetryLayer{HTTP.ExceptionRequest.ExceptionLayer{HTTP.ConnectionRequest.ConnectionPoolLayer{HTTP.StreamRequest.StreamLayer{Union{}}}}}}}}}, method::String, url::HTTP.URIs.URI, headers::Vector{Pair{SubString{String}, SubString{String}}}, body::Vector{UInt8}; redirect_limit::Int64, forwardheaders::Bool, kw::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ HTTP.RedirectRequest ~/.julia/packages/HTTP/IAI92/src/RedirectRequest.jl:24
[9] request(::Type{HTTP.RedirectRequest.RedirectLayer{HTTP.BasicAuthRequest.BasicAuthLayer{HTTP.MessageRequest.MessageLayer{HTTP.RetryRequest.RetryLayer{HTTP.ExceptionRequest.ExceptionLayer{HTTP.ConnectionRequest.ConnectionPoolLayer{HTTP.StreamRequest.StreamLayer{Union{}}}}}}}}}, method::String, url::HTTP.URIs.URI, headers::Vector{Pair{SubString{String}, SubString{String}}}, body::Vector{UInt8})
@ HTTP.RedirectRequest ~/.julia/packages/HTTP/IAI92/src/RedirectRequest.jl:18
[10] request(method::String, url::String, h::Vector{Pair{SubString{String}, SubString{String}}}, b::Vector{UInt8}; headers::Vector{Pair{SubString{String}, SubString{String}}}, body::Vector{UInt8}, query::Nothing, kw::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ HTTP ~/.julia/packages/HTTP/IAI92/src/HTTP.jl:314
[11] request (repeats 2 times)
@ ~/.julia/packages/HTTP/IAI92/src/HTTP.jl:312 [inlined]
[12] #get#12
@ ~/.julia/packages/HTTP/IAI92/src/HTTP.jl:391 [inlined]
[13] get
@ ~/.julia/packages/HTTP/IAI92/src/HTTP.jl:391 [inlined]
[14] DIVAnd.Vocab.CFVocab(; url::String)
@ DIVAnd.Vocab ~/.julia/packages/DIVAnd/MV3j9/src/Vocab.jl:53
[15] DIVAnd.Vocab.CFVocab()
@ DIVAnd.Vocab ~/.julia/packages/DIVAnd/MV3j9/src/Vocab.jl:52
[16] top-level scope
@ ~/.julia/packages/DIVAnd/MV3j9/test/test_vocab.jl:7
[17] include(fname::String)
@ Base.MainInclude ./client.jl:476
[18] macro expansion
@ ~/.julia/packages/DIVAnd/MV3j9/test/runtests.jl:82 [inlined]
[19] macro expansion
@ ~/Software/julia-1.8.3/share/julia/stdlib/v1.8/Test/src/Test.jl:1360 [inlined]
[20] top-level scope
@ ~/.julia/packages/DIVAnd/MV3j9/test/runtests.jl:13
[21] include(fname::String)
@ Base.MainInclude ./client.jl:476
[22] top-level scope
@ none:6
[23] eval
@ ./boot.jl:368 [inlined]
[24] exec_options(opts::Base.JLOptions)
@ Base ./client.jl:276
[25] _start()
@ Base ./client.jl:522
in expression starting at /home/ctroupin/.julia/packages/DIVAnd/MV3j9/test/test_vocab.jl:7
caused by: EOFError: read end of file
Stacktrace:
[1] read_to_buffer(t::HTTP.ConnectionPool.Transaction{Sockets.TCPSocket}, sizehint::Int64)
@ HTTP.ConnectionPool ~/.julia/packages/HTTP/IAI92/src/ConnectionPool.jl:252
[2] readuntil(t::HTTP.ConnectionPool.Transaction{Sockets.TCPSocket}, f::Function, sizehint::Int64)
@ HTTP.ConnectionPool ~/.julia/packages/HTTP/IAI92/src/ConnectionPool.jl:271
[3] readuntil
@ ~/.julia/packages/HTTP/IAI92/src/ConnectionPool.jl:269 [inlined]
[4] readheaders
@ ~/.julia/packages/HTTP/IAI92/src/Messages.jl:471 [inlined]
[5] startread(http::HTTP.Streams.Stream{HTTP.Messages.Response, HTTP.ConnectionPool.Transaction{Sockets.TCPSocket}})
@ HTTP.Streams ~/.julia/packages/HTTP/IAI92/src/Streams.jl:155
[6] macro expansion
@ ~/.julia/packages/HTTP/IAI92/src/StreamRequest.jl:67 [inlined]
[7] macro expansion
@ ./task.jl:454 [inlined]
[8] request(::Type{HTTP.StreamRequest.StreamLayer{Union{}}}, io::HTTP.ConnectionPool.Transaction{Sockets.TCPSocket}, req::HTTP.Messages.Request, body::Vector{UInt8}; reached_redirect_limit::Bool, response_stream::Nothing, iofunction::Nothing, verbose::Int64, kw::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ HTTP.StreamRequest ~/.julia/packages/HTTP/IAI92/src/StreamRequest.jl:57
[9] request(::Type{HTTP.ConnectionRequest.ConnectionPoolLayer{HTTP.StreamRequest.StreamLayer{Union{}}}}, url::HTTP.URIs.URI, req::HTTP.Messages.Request, body::Vector{UInt8}; proxy::Nothing, socket_type::Type, reuse_limit::Int64, kw::Base.Pairs{Symbol, Union{Nothing, Bool}, Tuple{Symbol, Symbol}, NamedTuple{(:iofunction, :reached_redirect_limit), Tuple{Nothing, Bool}}})
@ HTTP.ConnectionRequest ~/.julia/packages/HTTP/IAI92/src/ConnectionRequest.jl:96
[10] request(::Type{HTTP.ExceptionRequest.ExceptionLayer{HTTP.ConnectionRequest.ConnectionPoolLayer{HTTP.StreamRequest.StreamLayer{Union{}}}}}, ::HTTP.URIs.URI, ::Vararg{Any}; kw::Base.Pairs{Symbol, Union{Nothing, Bool}, Tuple{Symbol, Symbol}, NamedTuple{(:iofunction, :reached_redirect_limit), Tuple{Nothing, Bool}}})
@ HTTP.ExceptionRequest ~/.julia/packages/HTTP/IAI92/src/ExceptionRequest.jl:19
[11] (::Base.var"#88#90"{Base.var"#88#89#91"{ExponentialBackOff, HTTP.RetryRequest.var"#2#3"{Bool, HTTP.Messages.Request}, typeof(HTTP.request)}})(::Type, ::Vararg{Any}; kwargs::Base.Pairs{Symbol, Union{Nothing, Bool}, Tuple{Symbol, Symbol}, NamedTuple{(:iofunction, :reached_redirect_limit), Tuple{Nothing, Bool}}})
@ Base ./error.jl:296
[12] #request#1
@ ~/.julia/packages/HTTP/IAI92/src/RetryRequest.jl:44 [inlined]
[13] request(::Type{HTTP.MessageRequest.MessageLayer{HTTP.RetryRequest.RetryLayer{HTTP.ExceptionRequest.ExceptionLayer{HTTP.ConnectionRequest.ConnectionPoolLayer{HTTP.StreamRequest.StreamLayer{Union{}}}}}}}, method::String, url::HTTP.URIs.URI, headers::Vector{Pair{SubString{String}, SubString{String}}}, body::Vector{UInt8}; http_version::VersionNumber, target::String, parent::Nothing, iofunction::Nothing, kw::Base.Pairs{Symbol, Bool, Tuple{Symbol}, NamedTuple{(:reached_redirect_limit,), Tuple{Bool}}})
@ HTTP.MessageRequest ~/.julia/packages/HTTP/IAI92/src/MessageRequest.jl:51
[14] request(::Type{HTTP.BasicAuthRequest.BasicAuthLayer{HTTP.MessageRequest.MessageLayer{HTTP.RetryRequest.RetryLayer{HTTP.ExceptionRequest.ExceptionLayer{HTTP.ConnectionRequest.ConnectionPoolLayer{HTTP.StreamRequest.StreamLayer{Union{}}}}}}}}, method::String, url::HTTP.URIs.URI, headers::Vector{Pair{SubString{String}, SubString{String}}}, body::Vector{UInt8}; kw::Base.Pairs{Symbol, Bool, Tuple{Symbol}, NamedTuple{(:reached_redirect_limit,), Tuple{Bool}}})
@ HTTP.BasicAuthRequest ~/.julia/packages/HTTP/IAI92/src/BasicAuthRequest.jl:28
[15] request(::Type{HTTP.RedirectRequest.RedirectLayer{HTTP.BasicAuthRequest.BasicAuthLayer{HTTP.MessageRequest.MessageLayer{HTTP.RetryRequest.RetryLayer{HTTP.ExceptionRequest.ExceptionLayer{HTTP.ConnectionRequest.ConnectionPoolLayer{HTTP.StreamRequest.StreamLayer{Union{}}}}}}}}}, method::String, url::HTTP.URIs.URI, headers::Vector{Pair{SubString{String}, SubString{String}}}, body::Vector{UInt8}; redirect_limit::Int64, forwardheaders::Bool, kw::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ HTTP.RedirectRequest ~/.julia/packages/HTTP/IAI92/src/RedirectRequest.jl:24
[16] request(::Type{HTTP.RedirectRequest.RedirectLayer{HTTP.BasicAuthRequest.BasicAuthLayer{HTTP.MessageRequest.MessageLayer{HTTP.RetryRequest.RetryLayer{HTTP.ExceptionRequest.ExceptionLayer{HTTP.ConnectionRequest.ConnectionPoolLayer{HTTP.StreamRequest.StreamLayer{Union{}}}}}}}}}, method::String, url::HTTP.URIs.URI, headers::Vector{Pair{SubString{String}, SubString{String}}}, body::Vector{UInt8})
@ HTTP.RedirectRequest ~/.julia/packages/HTTP/IAI92/src/RedirectRequest.jl:18
[17] request(method::String, url::String, h::Vector{Pair{SubString{String}, SubString{String}}}, b::Vector{UInt8}; headers::Vector{Pair{SubString{String}, SubString{String}}}, body::Vector{UInt8}, query::Nothing, kw::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ HTTP ~/.julia/packages/HTTP/IAI92/src/HTTP.jl:314
[18] request (repeats 2 times)
@ ~/.julia/packages/HTTP/IAI92/src/HTTP.jl:312 [inlined]
[19] #get#12
@ ~/.julia/packages/HTTP/IAI92/src/HTTP.jl:391 [inlined]
[20] get
@ ~/.julia/packages/HTTP/IAI92/src/HTTP.jl:391 [inlined]
[21] DIVAnd.Vocab.CFVocab(; url::String)
@ DIVAnd.Vocab ~/.julia/packages/DIVAnd/MV3j9/src/Vocab.jl:53
[22] DIVAnd.Vocab.CFVocab()
@ DIVAnd.Vocab ~/.julia/packages/DIVAnd/MV3j9/src/Vocab.jl:52
[23] top-level scope
@ ~/.julia/packages/DIVAnd/MV3j9/test/test_vocab.jl:7
[24] include(fname::String)
@ Base.MainInclude ./client.jl:476
[25] macro expansion
@ ~/.julia/packages/DIVAnd/MV3j9/test/runtests.jl:82 [inlined]
[26] macro expansion
@ ~/Software/julia-1.8.3/share/julia/stdlib/v1.8/Test/src/Test.jl:1360 [inlined]
[27] top-level scope
@ ~/.julia/packages/DIVAnd/MV3j9/test/runtests.jl:13
[28] include(fname::String)
@ Base.MainInclude ./client.jl:476
[29] top-level scope
@ none:6
[30] eval
@ ./boot.jl:368 [inlined]
[31] exec_options(opts::Base.JLOptions)
@ Base ./client.jl:276
[32] _start()
@ Base ./client.jl:522
Test Summary: | Pass Error Total Time
DIVAnd | 244 1 245 3m19.2s
ERROR: LoadError: Some tests did not pass: 244 passed, 0 failed, 1 errored, 0 broken.
in expression starting at /home/ctroupin/.julia/packages/DIVAnd/MV3j9/test/runtests.jl:12
ERROR: Package DIVAnd errored during testing
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outside-divaErrors probably linked to issue somewhere elseErrors probably linked to issue somewhere else
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