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Commits on Jun 16, 2023

• Make default reference GO regex GAF 2.2 compatible

  FlorianBoecker

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Commits on Jul 20, 2020

• Correct Girish's Name in the Authors Section of the Readme

  FlorianBoecker

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Commits on Feb 16, 2017

• Update README.textile: New release tag v3.3.3

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  groupschoof

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Commits on Sep 24, 2016

• Docu: Fixed link to F-Score computation

  groupschoof

  authored
  35d69dc

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• Docu: Fixed link to F-Score computation

  groupschoof

  authored
  a7a602b

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• Updated documentation to explain blacklisting and filtering when computing performance scores.

  groupschoof

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Commits on Sep 23, 2016

• NaN or infinite numbers are written as 'NA' into output files.

  asishallab

  committed
  75b8ac0

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• Double.NaN is written as 'NA' into output files.

  asishallab

  committed
  48e5696

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• Double.NaN is written as 'NA' into output files.

  asishallab

  committed
  71dbce7

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• Evaluator can now return NaN F1-Score in case of no reference tokens

  asishallab

  committed
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Commits on Sep 14, 2016

• Inserted missing check for option 'prefer_reference_with_go_annos'

  asishallab

  committed
  8981af2

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Commits on Sep 2, 2016

• Fixed issue #10

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  asishallab

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Commits on Aug 30, 2016

• Typo and eclipse-.gitignore

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  FlorianBoecker

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Commits on Aug 19, 2016

• Merged remote README

  asishallab

  committed
  32400d6

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• Changed token balcklist to strict word-matching. Some tokens were discarded, that actually make sense.

  asishallab

  committed
  312f05d

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• Corrected TOC - Link to references was not workin

  groupschoof

  authored
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Commits on Aug 18, 2016

• Added the three new paramter also to 'trainer_filter_references_example_input.yml'

  asishallab

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• Implemented option to filter the reference descriptions as is done with candidate descriptions of normal BlastResults. That involves: Blacklisting, Filtering, and Blacklisting of Tokens.

  asishallab

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Commits on Aug 12, 2016

• Removed deprecated constants for generation of extended GO annotation tables

  asishallab

  committed
  d0148c8

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• Adjusted docu to deprecated extended GO annotation table function

  groupschoof

  authored
  cb93f57

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• Deleted symbolic link to example input file for generation of extended GO annotation tables.

  asishallab

  committed
  9dee255

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• Removed example input files for generation of extended GO tables.

  asishallab

  committed
  cd1f4c0

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• Merged remote master

  asishallab

  committed
  e6a2cd2

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• Removing option to generate extended GO Annotation tables

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  asishallab

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Commits on Jul 28, 2016

• Merge pull request #8 from wmnwmn/master

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  groupschoof

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Commits on Jul 22, 2016

• Remove several special chars from comments which prevented building by ant on

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  Will Nelson

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  0d2f489

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Commits on Jul 17, 2016

• Changed SQL 'SElECT' to 'SELECT' using all upper-case letters. NO code changes AT ALL.

  asishallab

  committed
  754990e

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• Updated documentation / installation guide to refer to latest version v3.3

  asishallab

  committed
  a92f561

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• Fixed bug when trying to select GO Term Parents of deprecated or non existing GO Term Accessions.

  asishallab

  committed
  21b633e

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Commits on Jul 16, 2016

• Made Evaluator to also generate extended GO output tables

  asishallab

  committed
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Commits on Jul 14, 2016

• Added reference to the new AHRD version 3.12 in README

  asishallab

  committed
  b25607b

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• Corrected link in TOC to chapter about new param

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  groupschoof

  authored
  da57343

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• Corrected links in the table of contents

  groupschoof

  authored
  cb1e94f

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• Merge pull request #7 from asishallab/patch-3

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  groupschoof

  authored
  d9884ed

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• Added documentation about the NEW parameter prefer_reference_with_go_annos

  asishallab

  authored
  568af53

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