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Commits on Jun 16, 2019

• Merge pull request #16 from azzaea/patch-1

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  yassineS

  authored
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Commits on May 19, 2019

• add citation data

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  azzaea

  authored
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Commits on Sep 10, 2018

• Adding AWS EC2 launch instructions

  yassineS

  authored
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Commits on Aug 29, 2018

• Switching to an MIT License

  yassineS

  authored
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Commits on Feb 9, 2018

• Merge pull request #13 from h3abionet/GATK_jar_as_input

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  hocinebendou

  authored
  6dcce32

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Commits on Jan 3, 2018

• Merge pull request #12 from zo0z/GATK_jar_as_input

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  hocinebendou

  authored
  85f4d28

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Commits on Dec 31, 2017

• fixing ReadGroup tag, GATK jar call in realignment stage

  azzaea

  committed
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Commits on Dec 26, 2017

• Define GATK jar file as an input file and not not using the docker image

  hocinebendou

  committed
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Commits on Aug 21, 2017

• resource_1kg missing as input in the WES workflow

  hocinebendou

  committed
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Commits on Aug 15, 2017

• Add space to resource_1kg line

  pvanheus

  authored
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Commits on Aug 12, 2017

• Merge pull request #9 from zo0z/master

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  pvanheus

  authored
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Commits on Aug 10, 2017

• fixing references to resources: 1kG for VQSR, dbsnp for Realignment stage - Thank you Jennie Zermeno for pointing out

  azzaea

  committed
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Commits on Jun 20, 2017

• Merge pull request #7 from zo0z/master

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  pvanheus

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Commits on Jun 19, 2017

• Fixing annotations and calling the recommended GATK annotations in VQSR

  azzaea

  committed
  0eac9e3

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• spcifying proper name for fastqc outputs

  azzaea

  committed
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• specifying complete path to fastqc.cwl

  azzaea

  committed
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Commits on Jun 14, 2017

• Merge pull request #3 from pvanheus/master

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  pvanheus

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Commits on May 18, 2017

• Add (optional) SnpEff java memory specification

  pvanheus

  committed
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• Update capitalisation of SnpEff

  pvanheus

  authored
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• * Change snpEff Docker container to use biocontainers one

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  pvanheus

  committed
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Commits on May 8, 2017

• Update README.md

  briandoconnor

  authored
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Commits on May 7, 2017

• correcting format

  briandoconnor

  committed
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• correcting format

  briandoconnor

  committed
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• updates

  briandoconnor

  committed
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• updates

  briandoconnor

  committed
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• updates

  briandoconnor

  committed
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• updating the test downloader

  briandoconnor

  committed
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Commits on May 2, 2017

• Merge branch 'master' of github.com:h3abionet/h3agatk

  briandoconnor

  committed
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• adding missing file

  briandoconnor

  committed
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• updates

  briandoconnor

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  briandoconnor

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  briandoconnor

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