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Commits on Apr 8, 2015

• CV and research statement: clean up typos and improve phrasing

  chapmanb

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Commits on Apr 6, 2015

• Updated research statement and CV for reappointment

  chapmanb

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Commits on Apr 3, 2015

• Abstract for BOSC 2015 on cancer prioritization

  chapmanb

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Commits on Apr 1, 2015

• Talk for Boston Computational Biology and Bioinformatics meetup

  chapmanb

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Commits on Mar 5, 2015

• cancer validation post: finalized and posted

  chapmanb

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Commits on Mar 1, 2015

• Cancer calling post: latest set of structural variant calls, provide cavaets of comparing callers, and update future work

  chapmanb

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Commits on Feb 6, 2015

• Talk for PGSG

  chapmanb

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Commits on Feb 4, 2015

• Add details about when tumor-only prioritization is applied (ekg/freebayes#107)

  chapmanb

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Commits on Feb 3, 2015

• Cancer calling post: incorporate suggestions from Oliver and add conclusions/future work

  chapmanb

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Commits on Jan 31, 2015

• v0.6.2: update version for Python 3 compatibility fixes #96

  chapmanb

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• Merge pull request #96 from mspinelli/master

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  chapmanb

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Commits on Jan 30, 2015

• Python 2/3 compatibiliy fixes

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  mspinelli

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Commits on Jan 28, 2015

• Update cancer_validation.org

  

  Oliver Hofmann

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Commits on Jan 23, 2015

• Talk at Good Start Genetics

  chapmanb

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Commits on Jan 6, 2015

• Cancer calling write up: include links to updated structural variant calls

  chapmanb

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Commits on Jan 5, 2015

• Update scalpel results with improved filtering and include suggestions from Oliver

  chapmanb

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Commits on Jan 3, 2015

• Exploratory script for identifying issues with structural variant calls and improving filtering

  chapmanb

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Commits on Dec 31, 2014

• Finalize initial writeup of cancer calling approaches, including tumor-only prioritization

  chapmanb

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Commits on Dec 28, 2014

• Add thanks to contributors and references to recently released work from ICGC and Bina

  chapmanb

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Commits on Dec 26, 2014

• Initial writeup of validating multiple tumor/normal callers against DREAM synthetic dataset

  chapmanb

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Commits on Dec 19, 2014

• Finalize AWS benchmarking post with comments from Oliver

  chapmanb

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Commits on Dec 18, 2014

• Merge pull request #94 from jwm/aws_benchmarking_ideas

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  chapmanb

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• Merge pull request #93 from jwm/command_typo

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  chapmanb

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• ideas

  jwm

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• typo

  jwm

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• Update AWS timing post with RNA-seq results and updated Lustre comparisons on bcbio

  chapmanb

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Commits on Dec 12, 2014

• AWS benchmarking: update with graphs from bcbio NFS run in preparation for Lustre details

  chapmanb

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Commits on Nov 24, 2014

• Fix problem links

  chapmanb

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• Re-write timing results section in preparation for new benchmarks on elasticluster bcbio

  chapmanb

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Commits on Nov 21, 2014

• Fix problem links

  chapmanb

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• Document architectural choices in the bcbio amazon setup

  chapmanb

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Commits on Nov 20, 2014

• Fixes and documentation improvements for running bcbio on AWS

  chapmanb

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• Update bcbio AWS post with documentation of running evaluations and more details about architecture

  chapmanb

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Commits on Nov 6, 2014

• Initial writeup on timing and automating bcbio on AWS

  chapmanb

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Commits on Oct 26, 2014

• v0.6.1: Provide Python3 compatibility fixes from @TheOneHyer. Also include in GFFParser and use six compatibility library for urllib issues. Fixes #90

  chapmanb

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